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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0303000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0312) R2 : 0.0056
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.105 (0.0656) R2dN8 : 0.00723 R2N8 : 0.0056
σ : 0.587
deviance : 158.01
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.35 0.563 2.97 -0.145 0.262 0.48 0.104 -0.926 0.221 1.11 17.52 1367 -- --
145.29 0.561 2.97 -0.183 0.274 0.478 0.228 -- 0.215 0.969 15.13 1375 -- --
143.37 0.558 2.97 -0.151 0.265 0.483 -- -0.944 0.223 1.13 17.52 1361 -- --
145.48 0.562 2.97 -0.197 0.276 0.471 -- -- 0.209 1.2 15.61 1361 -- --
147.25 0.565 2.96 -0.0916 -- 0.441 -- -0.993 0.241 -- 15.59 1440 -- --
152.92 0.58 3.01 -0.315 0.201 -- 0.117 -- 0.0671 1.33 -- -- -- --
152.97 0.579 3.01 -0.319 0.202 -- -- -- 0.0662 1.56 -- -- -- --
148.39 0.567 2.97 -0.174 -- 0.537 -- -- 0.222 -- 11.76 1555 -- --
146.45 0.564 2.98 -- 0.278 0.523 -- -- 0.226 1.13 12.3 1380 -- --
155.46 0.583 3.01 -0.311 -- -- -- -- 0.0706 -- -- -- -- --
155.65 0.584 3 -- 0.196 -- -- -- 0.102 1.5 -- -- -- --
149.02 0.569 2.97 -- -- 0.591 -- -- 0.245 -- 10.21 1548 -- --
158.01 0.587 3 -- -- -- -- -- 0.105 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 133.04 wind 5.0 30 > th dose independent rect. 24 6
3 133.58 wind 5.0 30 > th dose dependent rect. 24 6
47 138.92 wind 5.0 10 > th dose independent rect. 24 2
51 138.92 wind 5.0 10 > th dose dependent rect. 24 2
63 139.41 precipitation 0.1 90 > th dose independent rect. 23 2
64 139.41 precipitation 0.1 90 > th dose dependent rect. 23 2
73 139.58 precipitation 0.1 720 > th dose independent rect. 22 1
74 139.58 precipitation 0.1 720 > th dose dependent rect. 22 1
100 140.13 wind 1.0 270 < th dose dependent rect. 23 2
102 140.17 radiation 20.0 1440 < th dose dependent rect. 11 1
112 140.59 wind 5.0 30 > th dose independent rect. 22 3
119 140.69 wind 1.0 270 < th dose independent rect. 23 3
141 141.35 radiation 20.0 1440 < th dose independent rect. 11 1
145 141.43 atmosphere 1010.0 90 < th dose dependent rect. 1 4
176 142.07 radiation 30.0 43200 < th dose independent rect. 17 8
177 142.13 wind 9.0 90 > th dose independent rect. 15 1
179 142.13 wind 9.0 90 > th dose dependent rect. 15 1
181 142.14 wind 9.0 10 > th dose independent rect. 15 1
189 142.14 wind 9.0 10 > th dose dependent rect. 15 1
197 142.16 atmosphere 1010.0 10 < th dose dependent rect. 24 5
199 142.20 radiation 30.0 43200 < th dose independent rect. 17 11
201 142.23 wind 1.0 270 < th dose independent rect. 17 9
211 142.39 wind 1.0 270 < th dose dependent rect. 17 9
212 142.41 radiation 10.0 1440 < th dose independent rect. 13 1
235 142.68 radiation 1.0 90 < th dose independent rect. 10 4
237 142.68 radiation 1.0 90 < th dose dependent rect. 10 4
238 142.70 precipitation 0.1 30 > th dose dependent rect. 3 3
242 142.71 precipitation 0.1 30 > th dose independent rect. 3 3
275 142.72 precipitation 0.1 270 > th dose independent rect. 19 8
334 142.99 wind 1.0 90 < th dose independent rect. 14 14
348 143.07 radiation 10.0 1440 > th dose independent rect. 8 6
350 143.07 radiation 20.0 1440 < th dose dependent rect. 8 6
352 143.09 humidity 90.0 90 > th dose independent rect. 1 3
358 143.15 radiation 10.0 1440 > th dose independent rect. 10 3
363 143.16 precipitation 0.1 270 > th dose dependent rect. 19 7
364 143.18 humidity 90.0 30 > th dose independent rect. 3 1
370 143.20 radiation 1.0 10 < th dose independent rect. 13 1
381 143.20 radiation 1.0 10 < th dose dependent rect. 13 1
401 143.29 radiation 20.0 1440 < th dose independent rect. 8 6
438 143.40 radiation 1.0 1440 < th dose independent rect. 9 3
439 143.40 precipitation 0.1 270 > th dose independent rect. 10 16
440 143.40 radiation 1.0 1440 < th dose dependent rect. 9 3
454 143.45 radiation 1.0 14400 > th dose independent rect. 9 1
466 143.49 radiation 1.0 14400 < th dose independent rect. 9 1
472 143.53 radiation 20.0 270 < th dose independent rect. 11 2
511 143.61 humidity 80.0 90 > th dose dependent rect. 12 1
515 143.63 atmosphere 1010.0 90 < th dose dependent rect. 3 1
517 143.65 humidity 80.0 90 > th dose independent rect. 12 1
521 143.65 atmosphere 1010.0 10 < th dose dependent rect. 3 2
556 143.73 radiation 20.0 270 < th dose independent rect. 11 17
564 143.76 wind 1.0 43200 > th dose independent rect. 2 2
582 143.83 radiation 20.0 1440 < th dose independent rect. 1 13
595 143.84 radiation 20.0 1440 < th dose independent rect. 4 10
621 143.85 radiation 20.0 1440 < th dose independent rect. 19 19
640 143.88 humidity 80.0 14400 > th dose dependent rect. 4 2
648 143.90 humidity 80.0 14400 > th dose dependent rect. 3 4
649 143.90 humidity 90.0 30 > th dose dependent rect. 24 4
660 143.92 radiation 40.0 270 < th dose independent rect. 10 18
661 143.92 radiation 20.0 1440 < th dose independent rect. 11 18
675 143.94 wind 1.0 43200 < th dose independent rect. 2 2
676 143.94 humidity 70.0 1440 < th dose independent rect. 11 2
692 143.95 radiation 20.0 1440 < th dose independent rect. 11 15
699 143.95 precipitation 0.1 270 > th dose dependent rect. 10 16
701 143.96 radiation 1.0 1440 > th dose dependent rect. 11 2
705 143.96 humidity 50.0 90 > th dose dependent rect. 12 17
706 143.97 temperature 15.0 14400 > th dose independent rect. 9 1
723 143.99 wind 1.0 270 > th dose independent rect. 14 10
724 143.99 radiation 20.0 1440 < th dose independent rect. 11 22
749 144.02 precipitation 0.1 270 > th dose independent rect. 24 4
757 144.03 radiation 20.0 270 < th dose dependent rect. 11 2
822 144.10 humidity 90.0 14400 > th dose independent rect. 4 3
890 144.16 radiation 30.0 1440 < th dose dependent rect. 2 13
904 144.17 radiation 30.0 1440 < th dose dependent rect. 21 18
905 144.18 temperature 20.0 10 > th dose independent rect. 3 1
913 144.18 radiation 30.0 1440 < th dose dependent rect. 19 20
924 144.20 wind 5.0 90 > th dose independent rect. 12 2
925 144.20 humidity 70.0 1440 > th dose independent rect. 11 2
935 144.21 temperature 15.0 14400 < th dose independent rect. 9 1
963 144.23 radiation 1.0 4320 < th dose dependent rect. 22 7
964 144.23 radiation 1.0 4320 < th dose dependent rect. 20 9
966 144.24 precipitation 0.1 270 > th dose independent sin 19 NA
969 144.24 radiation 1.0 4320 < th dose dependent rect. 24 5
992 144.27 radiation 20.0 1440 < th dose independent sin 0 NA
1000 144.27 radiation 40.0 270 < th dose dependent rect. 11 17