Os02g0302900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reticulon family protein.
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Os02g0302900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reticulon family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.55 | 0.584 | 6.33 | 1.91 | 3.39 | 3.41 | 0.675 | -0.761 | 0.433 | 21.9 | 13.84 | 365 | 2.95 | 13.8 |
| 155.02 | 0.58 | 6.33 | 1.98 | 3.38 | 3.38 | 0.72 | -- | 0.444 | 21.9 | 13.59 | 373 | 2.88 | 13.8 |
| 154.66 | 0.579 | 6.33 | 1.83 | 3.5 | 3.53 | -- | -1.35 | 0.424 | 21.9 | 13.33 | 398 | 2.53 | 13.8 |
| 157.1 | 0.584 | 6.32 | 1.94 | 3.42 | 3.43 | -- | -- | 0.445 | 21.8 | 13.82 | 399 | 2.46 | 13.8 |
| 184.05 | 0.632 | 6.24 | 1.78 | -- | 4.12 | -- | -0.896 | 0.416 | -- | -15.78 | 1030 | 3.07 | 14.2 |
| 244.72 | 0.733 | 6.24 | 2.45 | 3.11 | -- | 0.893 | -- | 0.758 | 19.3 | -- | -- | -- | -- |
| 246.86 | 0.736 | 6.24 | 2.43 | 3.11 | -- | -- | -- | 0.76 | 19.3 | -- | -- | -- | -- |
| 177.77 | 0.621 | 6.23 | 1.91 | -- | 4.09 | -- | -- | 0.463 | -- | -12.79 | 1075 | 3.32 | 13 |
| 250.27 | 0.737 | 6.38 | -- | 3.51 | 4.21 | -- | -- | 0.198 | 22.4 | 14.91 | 410 | 2.88 | 13.3 |
| 759.69 | 1.29 | 6.17 | 2.38 | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
| 402.96 | 0.939 | 6.3 | -- | 3.09 | -- | -- | -- | 0.489 | 19.3 | -- | -- | -- | -- |
| 258.33 | 0.749 | 6.31 | -- | -- | 4.65 | -- | -- | 0.102 | -- | -1.85 | 1092 | 3 | 13.1 |
| 908.96 | 1.41 | 6.23 | -- | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 27 | 163.37 | temperature | 10 | 270 | > th | dose dependent | sin | 23 | NA |
| 36 | 164.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 53 | 165.29 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 76 | 166.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 78 | 166.78 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 12 |
| 157 | 169.79 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 17 |
| 185 | 170.64 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 203 | 171.18 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 301 | 173.80 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 339 | 174.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 482 | 176.24 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 601 | 177.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 651 | 178.60 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 698 | 178.94 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 814 | 180.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 900 | 181.05 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 23 |