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Os02g0302700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Nicotianamine aminotransferase A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.73 (0.0388) R2 : 0.683
β1 : -2.95 (0.152) R2dD : 0.4 R2D : 0.189
β2 : 1.24 (0.0862) R2dC : 0.148 R2C : 0.128
β3 : -0.413 (0.208) R2dE : 0.00474 R2E : -0.0631
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -9.76 (0.606) R2dD*E : 0.303 R2D*E : 0.194
γ1 : -0.399 (0.0737) R2dN8 : 0.0273 R2N8 : -0.0265
σ : 0.632
deviance : 184.38
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C
peak time of C : 21.5
E
wheather : radiation
threshold : 0.6002
memory length : 3761
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 17
open length of G : 1.17

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.85 0.642 7.73 -3 1.27 -0.484 -1.16 -9.65 -0.389 21.9 0.9426 4246 17 1.11
266.11 0.76 8.01 -2.98 1.19 -1.25 -1.75 -- -0.43 20.8 -18.6 24618 16.7 1.56
184.38 0.632 7.73 -2.95 1.24 -0.413 -- -9.76 -0.399 21.5 0.6002 3761 17 1.17
265.38 0.759 8.01 -2.98 1.19 -1.27 -- -- -0.454 20.9 -18.43 30268 16.7 1.73
263.78 0.756 7.73 -2.68 -- 0.174 -- -9.83 -0.409 -- 0.8383 3737 17 1.18
309.27 0.824 8.09 -2.51 1.25 -- -1.31 -- -0.69 21.7 -- -- -- --
315.76 0.832 8.09 -2.47 1.25 -- -- -- -0.688 21.6 -- -- -- --
344.56 0.865 8.02 -3.25 -- -1.74 -- -- -0.66 -- -20.96 47520 17.7 1.95
443.53 0.981 8.05 -- 1.25 1.45 -- -- -0.517 21.5 -17.08 47520 16.1 1.15
409.08 0.945 8.05 -2.45 -- -- -- -- -0.69 -- -- -- -- --
475.94 1.02 8.03 -- 1.25 -- -- -- -0.413 21.5 -- -- -- --
495.68 1.04 7.94 -- -- 1.56 -- -- -0.494 -- -43.37 30755 17 1.66
568.02 1.11 7.99 -- -- -- -- -- -0.418 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 187.42 humidity 90 43200 < th dose independent rect. 6 11
6 188.10 humidity 90 43200 < th dose independent rect. 6 8
9 188.24 humidity 90 43200 < th dose independent rect. 6 6
11 188.34 humidity 90 43200 > th dose independent rect. 6 12
12 188.40 temperature 30 43200 < th dose dependent rect. 20 1
16 188.43 temperature 10 43200 > th dose dependent rect. 20 1
20 188.45 temperature 30 43200 < th dose dependent rect. 5 2
28 188.51 humidity 90 43200 > th dose independent rect. 6 9
49 188.64 temperature 10 43200 > th dose dependent rect. 5 2
50 188.64 humidity 90 43200 > th dose dependent rect. 6 7
51 188.69 humidity 90 43200 > th dose independent rect. 6 3
72 188.80 radiation 1 4320 > th dose dependent rect. 17 1
76 188.81 humidity 80 43200 > th dose dependent rect. 7 5
105 188.97 temperature 30 43200 < th dose dependent rect. 18 14
154 189.13 humidity 80 43200 > th dose dependent rect. 8 3
161 189.13 temperature 10 43200 > th dose dependent rect. 18 14
213 189.23 temperature 30 43200 < th dose dependent sin 11 NA
302 189.35 temperature 10 43200 > th dose dependent sin 12 NA
468 189.68 radiation 40 4320 < th dose independent rect. 14 18
527 189.78 humidity 90 43200 < th dose independent sin 0 NA
680 190.00 temperature 30 43200 < th dose dependent rect. 1 1
710 190.04 temperature 10 43200 > th dose dependent no NA NA
717 190.04 temperature 10 43200 > th dose dependent rect. 1 23
731 190.06 temperature 10 43200 > th dose dependent rect. 3 23
783 190.11 temperature 25 43200 < th dose dependent rect. 21 20
808 190.13 temperature 30 43200 < th dose dependent no NA NA
832 190.14 temperature 30 43200 < th dose dependent rect. 1 23
844 190.15 temperature 30 43200 < th dose dependent rect. 3 23
895 190.19 temperature 10 43200 > th dose dependent rect. 1 1