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Os02g0301100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : MtN3 and saliva related transmembrane protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.9 (0.033) R2 : 0.757
β1 : 0.564 (0.146) R2dD : 0.0199 R2D : -0.163
β2 : 2.62 (0.0798) R2dC : 0.966 R2C : 0.493
β3 : -2.17 (0.204) R2dE : 0.217 R2E : -0.499
β4 : 2.3 (0.266) R2dD*C : 0.0503 R2D*C : -0.146
β5 : -7.66 (0.532) R2dD*E : 0.24 R2D*E : -0.0456
γ1 : -0.176 (0.0678) R2dN8 : 0.00736 R2N8 : -0.0864
σ : 0.485
deviance : 106.43
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C
peak time of C : 22.6
E
wheather : radiation
threshold : 84.02
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 9.78

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.43 0.485 13.9 0.564 2.62 -2.17 2.3 -7.66 -0.176 22.6 84.02 4320 18 9.78
122.37 0.515 13.7 -0.00105 2.36 -1.45 0.456 -- -0.249 22.7 178.8 47520 18.4 9.09
125.77 0.522 13.9 0.564 2.62 -2.17 -- -6.53 -0.176 22.5 84.02 4320 18 9.78
115.76 0.501 13.7 -0.0334 2.89 -1.75 -- -- -0.215 22.7 323 47520 18.5 9.35
278.62 0.782 13.6 -0.478 -- 1.17 -- 0.0831 -0.242 -- 83.51 18714 18.7 10.4
162.86 0.598 13.7 -0.467 2.09 -- 0.562 -- -0.194 22.7 -- -- -- --
164.16 0.6 13.7 -0.489 2.08 -- -- -- -0.195 22.7 -- -- -- --
262.67 0.758 13.6 -0.445 -- 1.24 -- -- -0.168 -- 313.7 47520 17.4 10.4
115.67 0.501 13.7 -- 2.9 -1.8 -- -- -0.222 22.7 313.1 47520 18.5 9.28
432.04 0.971 13.6 -0.448 -- -- -- -- -0.184 -- -- -- -- --
170.46 0.611 13.7 -- 2.08 -- -- -- -0.141 22.7 -- -- -- --
267.89 0.765 13.6 -- -- 1.24 -- -- -0.119 -- 313.7 47520 17.4 10.4
437.34 0.976 13.6 -- -- -- -- -- -0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 113.22 radiation 40.0 4320 < th dose dependent rect. 18 9
23 116.12 radiation 40.0 14400 > th dose dependent rect. 15 18
30 116.32 radiation 30.0 14400 < th dose independent rect. 15 17
33 116.47 radiation 40.0 14400 > th dose dependent rect. 7 2
49 116.48 radiation 30.0 14400 > th dose independent rect. 16 16
56 116.69 radiation 20.0 14400 > th dose dependent rect. 16 15
57 116.77 radiation 20.0 14400 < th dose independent rect. 16 15
61 116.87 temperature 10.0 270 > th dose dependent rect. 13 17
72 117.23 radiation 10.0 14400 < th dose dependent rect. 18 5
89 117.52 radiation 10.0 14400 < th dose dependent rect. 18 1
112 118.02 radiation 30.0 14400 < th dose independent rect. 16 12
115 118.03 radiation 10.0 14400 > th dose dependent rect. 17 13
120 118.22 radiation 30.0 14400 > th dose independent rect. 7 1
145 118.42 radiation 1.0 14400 < th dose dependent rect. 18 17
150 118.52 radiation 40.0 14400 < th dose independent rect. 7 2
158 118.62 radiation 10.0 14400 > th dose dependent rect. 17 1
170 118.63 radiation 30.0 14400 < th dose independent rect. 16 1
171 118.63 radiation 40.0 14400 < th dose independent rect. 20 13
184 118.81 radiation 40.0 14400 < th dose independent rect. 24 9
208 119.16 precipitation 0.1 270 < th dose independent rect. 13 16
209 119.16 precipitation 0.1 270 < th dose dependent rect. 13 16
219 119.24 radiation 30.0 14400 < th dose independent rect. 16 7
221 119.26 wind 5.0 43200 > th dose independent rect. 10 3
225 119.27 atmosphere 1005.0 43200 < th dose independent rect. 16 1
235 119.33 wind 5.0 43200 < th dose independent rect. 10 3
238 119.36 atmosphere 1005.0 43200 > th dose independent rect. 16 1
239 119.38 humidity 60.0 43200 > th dose independent rect. 15 1
241 119.39 wind 5.0 270 < th dose independent rect. 6 7
245 119.42 radiation 20.0 270 < th dose dependent rect. 15 10
253 119.50 radiation 1.0 14400 < th dose independent rect. 18 11
262 119.59 radiation 1.0 14400 < th dose independent rect. 18 9
283 119.64 radiation 1.0 14400 < th dose independent rect. 18 17
304 119.75 radiation 1.0 14400 < th dose independent rect. 18 5
309 119.77 radiation 1.0 43200 > th dose independent rect. 18 11
317 119.85 radiation 1.0 14400 < th dose independent rect. 18 1
346 119.99 radiation 1.0 14400 < th dose dependent sin 10 NA
360 120.04 radiation 40.0 4320 < th dose dependent rect. 20 10
370 120.09 wind 5.0 43200 < th dose independent rect. 3 12
377 120.13 radiation 1.0 14400 < th dose dependent rect. 2 9
378 120.13 radiation 1.0 14400 < th dose dependent rect. 20 15
379 120.14 humidity 60.0 43200 < th dose independent rect. 15 2
386 120.15 radiation 1.0 14400 < th dose dependent rect. 4 7
394 120.16 humidity 90.0 43200 < th dose independent rect. 8 2
406 120.17 humidity 90.0 43200 < th dose independent rect. 8 4
426 120.20 wind 5.0 43200 > th dose independent rect. 3 12
427 120.20 radiation 1.0 14400 > th dose independent rect. 18 17
431 120.22 wind 5.0 43200 < th dose independent rect. 5 1
435 120.23 wind 3.0 43200 > th dose dependent rect. 10 3
439 120.25 radiation 1.0 4320 > th dose dependent rect. 4 2
462 120.33 radiation 1.0 43200 > th dose independent rect. 18 1
482 120.36 humidity 90.0 43200 > th dose independent rect. 8 1
512 120.42 wind 1.0 43200 > th dose dependent rect. 3 1
516 120.44 radiation 10.0 270 < th dose independent rect. 15 10
522 120.46 wind 5.0 43200 < th dose independent rect. 5 9
525 120.46 radiation 10.0 4320 < th dose dependent rect. 22 8
548 120.54 wind 9.0 270 < th dose dependent rect. 6 7
557 120.55 wind 5.0 43200 > th dose independent rect. 5 9
558 120.55 temperature 15.0 270 > th dose independent rect. 13 16
561 120.55 radiation 10.0 4320 < th dose dependent rect. 24 6
592 120.60 radiation 40.0 4320 > th dose dependent rect. 13 20
594 120.61 radiation 30.0 4320 < th dose dependent rect. 17 15
654 120.74 radiation 1.0 14400 < th dose independent rect. 5 6
655 120.74 wind 5.0 43200 > th dose dependent rect. 9 5
663 120.76 radiation 1.0 14400 > th dose independent rect. 5 6
667 120.76 radiation 10.0 4320 < th dose dependent rect. 4 2
668 120.77 wind 3.0 43200 < th dose independent rect. 3 1
675 120.79 wind 3.0 43200 > th dose independent rect. 3 1
682 120.81 wind 5.0 43200 > th dose independent rect. 5 1
744 120.91 wind 5.0 43200 < th dose dependent rect. 3 1
762 120.93 humidity 90.0 43200 > th dose dependent rect. 8 1
776 120.96 radiation 1.0 14400 < th dose independent rect. 20 15
780 120.97 radiation 1.0 14400 < th dose independent rect. 22 13
793 120.99 radiation 1.0 14400 < th dose independent rect. 24 11
803 121.01 radiation 1.0 14400 < th dose independent rect. 2 9
811 121.02 radiation 40.0 4320 > th dose dependent rect. 13 2
835 121.05 humidity 90.0 43200 > th dose dependent rect. 19 1
872 121.09 wind 9.0 43200 < th dose dependent rect. 3 1
877 121.10 radiation 1.0 14400 < th dose independent sin 9 NA
900 121.12 humidity 90.0 43200 < th dose independent rect. 5 7
937 121.15 wind 5.0 43200 > th dose dependent rect. 3 11
948 121.17 humidity 70.0 14400 > th dose independent rect. 19 2
994 121.21 humidity 90.0 43200 > th dose independent rect. 5 6
999 121.22 humidity 70.0 14400 > th dose independent rect. 19 8