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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0299200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : IQ calmodulin-binding region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.79 (0.0759) R2 : 0.656
β1 : -6.23 (0.277) R2dD : 0.4 R2D : 0.293
β2 : 1.66 (0.236) R2dC : 0.0549 R2C : 0.105
β3 : -3.77 (0.431) R2dE : 0.089 R2E : 0.0998
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.11 (0.166) R2dN8 : 0.175 R2N8 : 0.0117
σ : 1.41
deviance : 921.35
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_____
C
peak time of C : 16.3
E
wheather : radiation
threshold : 10
memory length : 1130
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 12.1
open length of G : 8.3

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
908.19 1.42 6.81 -6.5 1.86 -3.91 2.6 3.82 -2.22 16.3 9.676 1161 10.9 8.94
916.55 1.41 6.78 -6.34 1.73 -3.73 1.67 -- -2.12 16.2 9.341 1136 11.9 8.35
923.35 1.42 6.81 -6.42 1.9 -3.87 -- 2.78 -2.24 16.4 10.01 1161 10.8 9.07
921.35 1.41 6.79 -6.23 1.66 -3.77 -- -- -2.11 16.3 10 1130 12.1 8.3
968.28 1.45 6.76 -6.4 -- -5.27 -- 2.79 -2.12 -- 9.993 1047 12.2 9.63
1074.84 1.54 6.73 -6.25 2.81 -- 1.21 -- -1.79 16.2 -- -- -- --
1078.93 1.54 6.73 -6.24 2.82 -- -- -- -1.78 16.3 -- -- -- --
943.8 1.43 6.75 -6.28 -- -4.83 -- -- -2.05 -- 10 1019 13.6 8.82
1913.11 2.04 6.78 -- 2.03 -3.3 -- -- -1.56 16 10.07 1199 14.5 4.78
1506.92 1.81 6.71 -6.35 -- -- -- -- -1.85 -- -- -- -- --
2105 2.15 6.57 -- 2.94 -- -- -- -1.08 16.2 -- -- -- --
2001.46 2.08 6.75 -- -- -4.74 -- -- -1.5 -- 10 1004 13.9 8.57
2571.21 2.37 6.55 -- -- -- -- -- -1.15 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 946.17 radiation 10 1440 < th dose dependent rect. 11 7
2 947.03 radiation 10 1440 < th dose dependent rect. 11 14
3 947.11 radiation 10 1440 < th dose dependent rect. 11 16
15 948.94 atmosphere 995 43200 < th dose dependent rect. 13 14
43 953.03 radiation 10 1440 < th dose dependent sin 18 NA
56 954.36 atmosphere 995 43200 > th dose independent rect. 17 18
57 954.36 atmosphere 995 43200 < th dose dependent sin 15 NA
65 955.91 atmosphere 995 43200 < th dose independent rect. 17 18
74 957.95 atmosphere 995 43200 > th dose independent rect. 16 20
90 958.46 atmosphere 995 43200 < th dose independent rect. 16 20
104 960.09 radiation 10 1440 < th dose independent rect. 15 2
124 962.22 radiation 20 4320 > th dose dependent rect. 16 16
126 962.38 radiation 10 1440 > th dose independent rect. 11 1
127 962.43 humidity 80 1440 < th dose dependent rect. 16 1
135 963.19 radiation 10 1440 > th dose independent rect. 11 19
137 963.30 radiation 10 1440 > th dose independent rect. 11 7
153 964.04 radiation 20 4320 > th dose independent rect. 16 16
160 964.51 radiation 10 1440 > th dose independent rect. 11 22
161 964.52 wind 1 14400 < th dose independent rect. 1 1
190 965.66 humidity 80 1440 < th dose dependent rect. 13 8
192 965.69 radiation 20 1440 < th dose dependent rect. 11 1
263 968.15 atmosphere 995 43200 > th dose independent rect. 21 19
266 968.19 wind 1 14400 > th dose independent rect. 1 1
289 968.90 humidity 80 1440 < th dose dependent sin 17 NA
291 968.91 radiation 10 1440 > th dose independent sin 16 NA
299 969.06 wind 3 4320 > th dose independent rect. 8 1
317 969.59 radiation 1 1440 > th dose dependent rect. 15 2
336 969.94 atmosphere 995 43200 < th dose independent rect. 18 22
345 970.05 radiation 20 1440 > th dose dependent rect. 16 1
403 970.49 wind 1 1440 < th dose independent rect. 3 3
408 970.56 atmosphere 995 43200 < th dose independent rect. 21 19
430 970.95 atmosphere 1005 720 > th dose independent rect. 21 4
439 971.13 atmosphere 1005 720 < th dose independent rect. 21 4
440 971.14 wind 3 4320 < th dose independent rect. 8 1
447 971.36 atmosphere 1005 270 > th dose independent rect. 22 8
504 972.32 radiation 10 1440 < th dose independent rect. 14 11
506 972.41 radiation 10 1440 < th dose independent rect. 14 13
543 972.80 atmosphere 1005 720 < th dose independent rect. 22 1
578 973.25 atmosphere 995 43200 > th dose independent sin 11 NA
586 973.31 atmosphere 995 43200 < th dose independent sin 11 NA
589 973.33 radiation 10 1440 < th dose independent rect. 11 7
596 973.42 humidity 70 1440 < th dose independent sin 13 NA
606 973.58 radiation 10 1440 > th dose independent rect. 8 22
608 973.58 humidity 50 1440 > th dose dependent rect. 12 5
615 973.65 radiation 10 1440 > th dose independent rect. 8 10
646 974.01 humidity 50 1440 > th dose dependent rect. 12 9
653 974.15 wind 1 14400 > th dose independent rect. 14 1
705 974.85 humidity 70 1440 < th dose independent rect. 15 17
736 975.32 radiation 10 1440 > th dose independent rect. 15 2
758 975.48 wind 3 1440 < th dose dependent rect. 4 2
772 975.60 humidity 70 1440 < th dose independent rect. 15 5
784 975.60 radiation 10 1440 < th dose independent rect. 11 14
793 975.65 radiation 10 1440 < th dose independent rect. 11 16
816 975.80 humidity 70 720 > th dose independent rect. 18 9
836 975.85 radiation 10 1440 > th dose independent rect. 15 22
898 976.12 atmosphere 1005 720 > th dose independent rect. 21 2
911 976.20 wind 1 1440 > th dose independent rect. 3 3
946 976.32 humidity 70 1440 > th dose independent sin 14 NA
965 976.43 humidity 60 1440 > th dose independent rect. 14 3