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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0299000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.05 (0.0508) R2 : 0.375
β1 : 1.38 (0.186) R2dD : 0.0786 R2D : 0.0411
β2 : 1.87 (0.132) R2dC : 0.276 R2C : 0.249
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.681 (0.108) R2dN8 : 0.0724 R2N8 : 0.0238
σ : 0.955
deviance : 416.06
__
_____
C
peak time of C : 18.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
387.61 0.925 4.17 0.916 1.87 2.66 1.82 -20.7 0.663 18.5 999.8 1487 -- --
396.49 0.935 4.06 1.5 1.87 -1.17 1.87 -- 0.64 18.5 999.8 1487 -- --
395.82 0.927 4.15 0.955 1.87 2.69 -- -21.4 0.664 18.5 999.2 1541 -- --
404.99 0.943 4.06 1.48 1.88 -1.08 -- -- 0.642 18.4 1001 949 -- --
577.71 1.12 4.09 0.981 -- 2.52 -- -21.9 0.63 -- 998.5 1554 -- --
407.49 0.946 4.05 1.41 1.87 -- 1.85 -- 0.675 18.5 -- -- -- --
416.06 0.955 4.05 1.38 1.87 -- -- -- 0.681 18.4 -- -- -- --
587.17 1.13 4.01 1.4 -- 2.1 -- -- 0.661 -- 992 2730 -- --
461.27 1.01 4.09 -- 1.86 -0.73 -- -- 0.494 18.5 1001 859 -- --
598.65 1.14 4.01 1.33 -- -- -- -- 0.641 -- -- -- -- --
466.39 1.01 4.08 -- 1.86 -- -- -- 0.527 18.5 -- -- -- --
638.83 1.18 4.03 -- -- 1.45 -- -- 0.524 -- 994.1 1868 -- --
645.6 1.19 4.05 -- -- -- -- -- 0.493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.75 temperature 20.0 10 > th dose dependent rect. 3 13
3 382.34 radiation 10.0 14400 < th dose dependent rect. 8 2
6 382.75 temperature 20.0 10 > th dose dependent sin 2 NA
7 382.77 temperature 20.0 90 > th dose dependent rect. 3 12
11 383.17 temperature 20.0 270 > th dose dependent rect. 24 13
13 383.29 temperature 20.0 10 < th dose independent rect. 6 6
18 383.42 temperature 20.0 10 < th dose independent rect. 6 4
22 383.53 temperature 25.0 10 > th dose dependent rect. 21 19
26 383.57 temperature 20.0 10 < th dose independent rect. 6 12
31 383.59 temperature 25.0 10 > th dose dependent rect. 7 9
34 383.68 temperature 20.0 10 < th dose independent rect. 6 2
52 383.98 temperature 20.0 30 < th dose dependent rect. 6 4
66 384.13 temperature 20.0 30 < th dose dependent rect. 6 2
71 384.18 temperature 20.0 30 < th dose dependent rect. 6 10
92 384.40 temperature 20.0 30 < th dose dependent rect. 6 8
99 384.45 radiation 10.0 14400 > th dose independent rect. 8 3
130 384.59 wind 5.0 10 > th dose independent rect. 8 1
134 384.59 wind 5.0 10 > th dose dependent rect. 8 1
206 385.06 atmosphere 1015.0 1440 < th dose independent rect. 11 1
227 385.26 atmosphere 1015.0 1440 < th dose independent rect. 9 3
238 385.35 humidity 80.0 43200 < th dose independent rect. 10 20
251 385.45 atmosphere 1015.0 1440 < th dose independent rect. 4 8
259 385.49 atmosphere 1015.0 1440 > th dose independent rect. 10 1
274 385.49 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
300 385.57 humidity 80.0 43200 < th dose independent rect. 12 15
320 385.70 humidity 80.0 43200 > th dose independent rect. 10 20
364 385.98 humidity 80.0 43200 > th dose independent rect. 12 15
377 386.04 atmosphere 1000.0 1440 < th dose dependent rect. 13 1
406 386.18 atmosphere 1000.0 1440 < th dose dependent rect. 4 14
438 386.31 atmosphere 1000.0 1440 < th dose dependent rect. 8 7
456 386.36 precipitation 0.1 43200 > th dose independent rect. 5 14
463 386.38 precipitation 0.1 43200 < th dose independent rect. 5 14
466 386.38 precipitation 0.1 43200 < th dose dependent rect. 5 14
485 386.48 atmosphere 1000.0 1440 < th dose dependent sin 2 NA
582 386.90 temperature 30.0 90 < th dose dependent rect. 5 13
623 387.10 precipitation 0.1 43200 > th dose dependent rect. 6 11
624 387.11 humidity 80.0 43200 < th dose independent sin 17 NA
697 387.40 humidity 80.0 43200 > th dose independent rect. 21 23
748 387.60 humidity 70.0 43200 > th dose dependent rect. 18 6
755 387.64 humidity 80.0 43200 > th dose independent sin 16 NA
756 387.64 atmosphere 1000.0 1440 < th dose dependent rect. 12 22
767 387.70 temperature 30.0 30 < th dose dependent sin 2 NA
768 387.70 wind 9.0 43200 > th dose dependent rect. 22 1
788 387.75 humidity 80.0 43200 > th dose independent rect. 24 23
811 387.77 atmosphere 1000.0 1440 < th dose dependent rect. 8 22
821 387.79 atmosphere 1000.0 1440 < th dose dependent no NA NA
822 387.79 humidity 70.0 43200 > th dose dependent rect. 21 2
832 387.81 humidity 80.0 43200 < th dose independent rect. 21 23
835 387.82 humidity 80.0 43200 > th dose independent rect. 4 23
860 387.86 humidity 80.0 43200 > th dose independent rect. 2 23
930 388.03 humidity 80.0 43200 > th dose independent no NA NA
937 388.04 atmosphere 1005.0 720 < th dose dependent rect. 5 1
976 388.17 precipitation 0.1 43200 < th dose independent sin 1 NA
977 388.17 precipitation 0.1 43200 < th dose dependent sin 1 NA
984 388.19 precipitation 0.1 43200 > th dose independent sin 1 NA
986 388.19 humidity 80.0 43200 < th dose independent rect. 2 23
996 388.21 humidity 80.0 43200 < th dose independent rect. 5 22