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Os02g0298900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0199) R2 : 0.845
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.48 (0.0515) R2dC : 0.844 R2C : 0.642
β3 : 1.44 (0.0608) R2dE : 0.203 R2E : 0.000742
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000492 (0.0417) R2dN8 : -4.97e-08 R2N8 : -0.00567
σ : 0.372
deviance : 63.93
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C
peak time of C : 20.5
E
wheather : radiation
threshold : 11.91
memory length : 13
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 22.1
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
61.83 0.369 10.6 -0.261 2.48 1.45 0.266 -0.18 -0.0285 20.6 11.48 14 21.9 --
61.88 0.366 10.6 -0.257 2.47 1.45 0.28 -- -0.0277 20.6 11.42 13 22 --
62.05 0.367 10.6 -0.27 2.48 1.46 -- -0.205 -0.0285 20.6 11.55 13 22 --
62.13 0.367 10.6 -0.263 2.48 1.45 -- -- -0.0274 20.6 11.54 13 22 --
129.4 0.533 10.5 -0.227 -- 1.96 -- 0.174 -0.0407 -- 11.61 6 7.95 --
93.15 0.452 10.6 -0.234 2.29 -- 0.238 -- -0.0697 22.1 -- -- -- --
93.37 0.453 10.6 -0.243 2.29 -- -- -- -0.0702 22.1 -- -- -- --
96.42 0.457 10.5 -0.291 -- 2.21 -- -- -0.0687 -- 146.9 2 8.01 --
63.93 0.372 10.6 -- 2.48 1.44 -- -- 0.000492 20.5 11.91 13 22.1 --
411.31 0.948 10.5 -0.213 -- -- -- -- -0.0672 -- -- -- -- --
94.93 0.456 10.6 -- 2.29 -- -- -- -0.0431 22.1 -- -- -- --
95.56 0.455 10.5 -- -- 2.28 -- -- -0.051 -- 597.9 14 8.08 --
412.51 0.948 10.5 -- -- -- -- -- -0.0436 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.64 radiation 10.0 10 < th dose dependent sin 4 NA
6 64.47 radiation 10.0 90 < th dose dependent rect. 1 16
9 65.03 radiation 1.0 270 < th dose dependent rect. 23 17
12 65.21 radiation 1.0 90 > th dose independent sin 4 NA
13 65.23 radiation 1.0 90 < th dose independent sin 4 NA
16 65.51 radiation 10.0 10 < th dose dependent rect. 2 15
22 65.60 radiation 1.0 90 < th dose independent rect. 1 16
24 65.61 radiation 1.0 270 < th dose independent rect. 23 17
31 65.84 temperature 30.0 270 < th dose independent rect. 4 8
64 66.59 radiation 10.0 90 < th dose dependent rect. 1 9
96 67.14 radiation 1.0 90 > th dose independent rect. 4 9
110 67.25 radiation 1.0 90 < th dose independent rect. 1 7
117 67.31 radiation 1.0 90 < th dose independent rect. 1 10
123 67.42 atmosphere 1015.0 270 < th dose independent rect. 23 6
137 67.53 wind 9.0 270 < th dose independent rect. 23 6
138 67.53 temperature 10.0 270 > th dose independent rect. 23 6
139 67.53 temperature 30.0 270 < th dose independent rect. 23 6
140 67.53 humidity 50.0 270 > th dose independent rect. 23 6
143 67.53 atmosphere 995.0 270 > th dose independent rect. 23 6
147 67.53 temperature 10.0 270 > th dose independent rect. 5 18
157 67.71 precipitation 0.1 270 < th dose independent rect. 5 18
159 67.71 precipitation 0.1 270 < th dose dependent rect. 5 18
167 67.86 radiation 10.0 10 < th dose dependent rect. 1 9
170 67.91 wind 9.0 270 < th dose independent rect. 24 16
195 68.39 temperature 10.0 270 > th dose dependent rect. 23 6
196 68.40 radiation 30.0 270 < th dose independent rect. 16 8
197 68.40 atmosphere 1015.0 270 < th dose independent rect. 24 16
198 68.41 temperature 10.0 270 > th dose independent rect. 16 8
200 68.41 temperature 10.0 270 > th dose independent rect. 24 16
219 68.53 atmosphere 995.0 270 > th dose independent rect. 24 16
233 68.60 wind 9.0 270 < th dose independent rect. 12 16
251 68.62 precipitation 0.1 270 < th dose independent rect. 23 6
252 68.62 precipitation 0.1 270 < th dose dependent rect. 23 6
254 68.63 wind 9.0 270 < th dose independent rect. 5 18
258 68.67 temperature 15.0 270 > th dose independent rect. 4 8
267 68.73 wind 1.0 270 > th dose independent rect. 16 8
269 68.74 temperature 30.0 270 < th dose independent rect. 18 16
270 68.76 radiation 1.0 270 > th dose independent sin 8 NA
271 68.76 precipitation 0.1 270 < th dose independent rect. 4 7
274 68.76 precipitation 0.1 270 < th dose dependent rect. 4 7
278 68.82 radiation 40.0 270 < th dose independent rect. 4 7
279 68.83 wind 9.0 270 < th dose independent rect. 16 8
280 68.84 radiation 1.0 270 < th dose independent sin 8 NA
301 68.90 humidity 50.0 270 > th dose dependent rect. 23 6
309 68.94 precipitation 0.1 270 < th dose independent rect. 16 8
310 68.94 precipitation 0.1 270 < th dose dependent rect. 16 8
316 69.02 humidity 80.0 10 > th dose dependent rect. 24 17
350 69.26 atmosphere 995.0 270 > th dose independent rect. 4 7
351 69.26 atmosphere 1015.0 270 < th dose independent rect. 4 7
352 69.26 temperature 10.0 270 > th dose independent rect. 11 17
355 69.28 wind 9.0 270 < th dose independent rect. 4 7
363 69.32 radiation 40.0 270 < th dose dependent rect. 16 8
406 69.45 wind 9.0 270 < th dose independent rect. 23 18
429 69.65 atmosphere 1015.0 270 < th dose independent rect. 23 18
437 69.68 atmosphere 995.0 270 > th dose independent rect. 16 8
447 69.72 precipitation 0.1 270 < th dose independent rect. 18 15
449 69.72 precipitation 0.1 270 < th dose dependent rect. 18 15
475 69.85 humidity 50.0 270 > th dose independent rect. 4 7
486 69.93 temperature 10.0 270 > th dose independent rect. 17 6
487 69.93 radiation 20.0 270 < th dose independent rect. 17 6
490 69.93 wind 9.0 270 < th dose independent rect. 9 9
491 69.93 temperature 10.0 270 > th dose independent rect. 23 18
496 69.98 precipitation 0.1 270 < th dose independent rect. 24 16
498 69.98 precipitation 0.1 270 < th dose dependent rect. 24 16
499 69.99 wind 1.0 270 > th dose independent rect. 23 6
504 70.01 wind 9.0 270 < th dose dependent rect. 23 5
507 70.02 atmosphere 995.0 90 > th dose dependent rect. 6 19
513 70.07 wind 1.0 90 > th dose independent rect. 1 5
532 70.13 wind 9.0 270 < th dose independent rect. 17 6
539 70.17 wind 1.0 270 > th dose independent rect. 9 9
540 70.17 radiation 40.0 270 < th dose independent rect. 18 16
550 70.22 atmosphere 995.0 270 > th dose independent rect. 5 18
567 70.25 precipitation 0.1 270 < th dose independent rect. 17 6
568 70.25 precipitation 0.1 270 < th dose dependent rect. 17 6
612 70.41 atmosphere 995.0 270 > th dose independent rect. 17 6
613 70.43 humidity 50.0 270 > th dose independent rect. 24 16
619 70.47 humidity 50.0 270 > th dose independent rect. 17 6
621 70.47 humidity 80.0 10 > th dose independent rect. 1 16
640 70.56 temperature 10.0 270 > th dose independent rect. 9 9
641 70.56 atmosphere 1015.0 270 < th dose independent rect. 9 9
642 70.56 temperature 10.0 270 > th dose independent rect. 18 15
643 70.56 humidity 50.0 270 > th dose independent rect. 18 15
651 70.58 atmosphere 995.0 270 > th dose independent rect. 18 15
682 70.66 wind 9.0 270 < th dose independent rect. 18 15
694 70.73 precipitation 0.1 270 < th dose independent rect. 12 16
697 70.73 precipitation 0.1 270 < th dose dependent rect. 12 16
699 70.75 radiation 40.0 270 < th dose independent rect. 5 18
742 70.86 radiation 40.0 90 < th dose independent rect. 13 16
743 70.86 atmosphere 995.0 270 > th dose dependent rect. 24 4
795 70.92 atmosphere 995.0 270 > th dose independent rect. 12 16
842 71.02 radiation 40.0 270 < th dose independent rect. 4 20
861 71.09 atmosphere 1015.0 270 < th dose independent rect. 5 18
927 71.26 atmosphere 1015.0 270 < th dose independent rect. 11 17
934 71.30 precipitation 0.1 270 < th dose independent rect. 10 8
936 71.30 precipitation 0.1 270 < th dose dependent rect. 10 8
987 71.47 precipitation 0.1 270 < th dose independent rect. 23 18
992 71.47 precipitation 0.1 270 < th dose dependent rect. 23 18