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Os02g0298200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Resistance protein candidate (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.11 (0.0393) R2 : 0.754
β1 : 2.3 (0.146) R2dD : 0.152 R2D : 0.0013
β2 : 3.12 (0.0992) R2dC : 0.538 R2C : 0.45
β3 : -1.28 (0.134) R2dE : 0.0636 R2E : -0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.62 (0.0906) R2dN8 : 0.285 R2N8 : 0.0443
σ : 0.715
deviance : 235.73
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C
peak time of C : 19
E
wheather : radiation
threshold : 10.08
memory length : 1407
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
227.31 0.708 6.1 2.36 3.12 -1.3 1.8 0.11 1.63 19 10.04 1408 -- --
227.31 0.702 6.11 2.35 3.12 -1.29 1.82 -- 1.63 19 10.07 1402 -- --
235.68 0.715 6.1 2.35 3.12 -1.3 -- 0.213 1.64 18.9 10.09 1407 -- --
235.73 0.715 6.11 2.3 3.12 -1.28 -- -- 1.62 19 10.08 1407 -- --
736.11 1.26 6.02 2.32 -- -1.49 -- -0.0353 1.63 -- 10.04 1498 -- --
274.5 0.777 6.19 1.94 3.11 -- 1.8 -- 1.25 18.8 -- -- -- --
282.79 0.787 6.18 1.91 3.11 -- -- -- 1.25 18.8 -- -- -- --
736.07 1.26 6.02 2.27 -- -1.45 -- -- 1.61 -- 10.05 1498 -- --
306.42 0.815 6.17 -- 3.26 -2.21 -- -- 1.34 19.1 9.888 4149 -- --
790.3 1.31 6.12 1.84 -- -- -- -- 1.19 -- -- -- -- --
378.86 0.911 6.23 -- 3.09 -- -- -- 1.04 18.8 -- -- -- --
822.05 1.34 6.08 -- -- -2.14 -- -- 1.32 -- 9.551 15938 -- --
879.66 1.38 6.17 -- -- -- -- -- 0.987 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 222.58 humidity 70 43200 > th dose dependent rect. 19 4
2 222.68 radiation 10 4320 > th dose independent rect. 8 5
8 223.22 humidity 80 43200 > th dose independent rect. 24 22
9 223.25 humidity 60 43200 > th dose dependent rect. 9 18
20 223.46 humidity 80 43200 < th dose independent rect. 8 21
21 223.48 radiation 10 14400 > th dose independent rect. 8 1
25 223.51 humidity 80 43200 < th dose independent rect. 23 23
35 223.64 radiation 20 14400 < th dose dependent rect. 8 1
39 223.70 humidity 70 43200 > th dose dependent rect. 20 1
41 223.71 humidity 80 43200 > th dose independent rect. 8 21
50 223.75 radiation 10 14400 > th dose independent rect. 6 1
54 223.76 radiation 20 4320 < th dose dependent rect. 8 4
59 223.80 humidity 60 43200 > th dose dependent rect. 19 23
60 223.81 humidity 60 43200 > th dose dependent no NA NA
61 223.81 humidity 60 43200 > th dose dependent rect. 13 23
62 223.81 humidity 60 43200 > th dose dependent rect. 17 23
63 223.82 humidity 60 43200 > th dose dependent rect. 1 23
67 223.84 humidity 60 43200 > th dose dependent rect. 23 23
88 223.94 humidity 60 43200 > th dose dependent sin 17 NA
91 223.95 humidity 60 43200 > th dose dependent rect. 15 23
121 224.12 humidity 60 43200 > th dose dependent rect. 13 13
135 224.20 humidity 80 43200 > th dose independent rect. 2 23
186 224.39 humidity 80 43200 < th dose independent rect. 2 23
205 224.49 humidity 60 43200 > th dose dependent rect. 1 15
227 224.63 temperature 30 43200 < th dose independent rect. 10 1
231 224.65 humidity 80 43200 > th dose independent no NA NA
236 224.67 humidity 80 43200 > th dose independent rect. 19 23
237 224.68 temperature 30 43200 > th dose independent rect. 10 1
298 224.97 humidity 60 43200 > th dose dependent sin 4 NA
301 224.99 humidity 80 43200 < th dose independent no NA NA
319 225.06 wind 1 43200 < th dose independent rect. 4 2
354 225.19 humidity 80 43200 < th dose independent rect. 19 23
373 225.25 humidity 80 43200 > th dose independent rect. 16 23
383 225.28 radiation 20 4320 < th dose independent rect. 8 4
419 225.38 humidity 80 43200 > th dose independent rect. 1 14
444 225.46 temperature 25 43200 > th dose dependent rect. 7 1
449 225.48 temperature 30 43200 < th dose independent rect. 7 4
454 225.49 radiation 1 4320 > th dose dependent rect. 9 1
461 225.50 temperature 30 43200 < th dose independent rect. 24 11
474 225.52 temperature 30 43200 < th dose independent rect. 2 9
482 225.53 radiation 10 1440 > th dose independent rect. 6 10
528 225.58 temperature 30 43200 > th dose dependent rect. 11 1
573 225.69 humidity 80 43200 > th dose independent rect. 11 18
586 225.72 humidity 80 43200 > th dose independent rect. 13 23
599 225.75 wind 1 43200 < th dose independent rect. 2 4
645 225.80 humidity 80 43200 > th dose independent rect. 24 16
708 226.00 radiation 20 4320 > th dose independent sin 7 NA
725 226.05 temperature 25 43200 < th dose independent rect. 6 1
737 226.08 humidity 80 43200 < th dose independent rect. 1 14
806 226.21 temperature 25 43200 > th dose independent rect. 6 1
807 226.21 temperature 25 43200 < th dose independent rect. 3 1
812 226.22 humidity 80 43200 > th dose independent sin 16 NA
815 226.23 humidity 80 43200 < th dose independent rect. 11 18
819 226.24 humidity 80 43200 < th dose independent sin 16 NA
835 226.29 wind 1 43200 > th dose independent rect. 2 4
890 226.48 humidity 80 43200 > th dose independent sin 4 NA
893 226.48 humidity 80 43200 < th dose independent rect. 24 16
930 226.56 temperature 25 43200 < th dose independent rect. 3 4
940 226.57 radiation 20 14400 < th dose independent rect. 8 1
943 226.58 humidity 80 43200 < th dose independent rect. 13 14
977 226.67 radiation 10 1440 > th dose independent sin 2 NA