Os02g0297600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF707 family protein.
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Os02g0297600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF707 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.53 | 0.179 | 11.7 | 0.0926 | 0.462 | -0.311 | 0.06 | 0.246 | 0.198 | 0.00651 | 19.4 | 7 | -- | -- |
| 14.74 | 0.179 | 11.7 | 0.119 | 0.457 | -0.337 | 0.133 | -- | 0.205 | 24 | 19.3 | 5 | -- | -- |
| 14.55 | 0.178 | 11.7 | 0.0886 | 0.462 | -0.312 | -- | 0.264 | 0.198 | 0.0238 | 19.39 | 5 | -- | -- |
| 14.81 | 0.179 | 11.7 | 0.115 | 0.465 | -0.348 | -- | -- | 0.203 | 0.0469 | 19.3 | 3 | -- | -- |
| 26.85 | 0.241 | 11.7 | 0.137 | -- | -0.123 | -- | 0.357 | 0.223 | -- | 19.7 | 27 | -- | -- |
| 18.15 | 0.2 | 11.7 | 0.226 | 0.398 | -- | 0.237 | -- | 0.255 | 23.8 | -- | -- | -- | -- |
| 18.39 | 0.201 | 11.7 | 0.216 | 0.397 | -- | -- | -- | 0.254 | 23.9 | -- | -- | -- | -- |
| 24.25 | 0.229 | 11.7 | 0.0946 | -- | -0.371 | -- | -- | 0.185 | -- | 20.5 | 954 | -- | -- |
| 15.14 | 0.181 | 11.7 | -- | 0.471 | -0.374 | -- | -- | 0.187 | 0.0683 | 19.31 | 5 | -- | -- |
| 28.33 | 0.249 | 11.6 | 0.228 | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
| 19.62 | 0.207 | 11.7 | -- | 0.4 | -- | -- | -- | 0.23 | 23.9 | -- | -- | -- | -- |
| 24.42 | 0.23 | 11.7 | -- | -- | -0.367 | -- | -- | 0.176 | -- | 20.5 | 971 | -- | -- |
| 29.7 | 0.254 | 11.7 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.33 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 15 |
| 2 | 13.35 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 17 |
| 4 | 13.45 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 19 | 13.68 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 23 |
| 25 | 13.75 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 23 |
| 36 | 13.87 | temperature | 20 | 90 | > th | dose independent | sin | 12 | NA |
| 62 | 14.02 | temperature | 25 | 270 | < th | dose dependent | rect. | 9 | 16 |
| 95 | 14.18 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 106 | 14.21 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 17 |
| 122 | 14.28 | temperature | 20 | 90 | < th | dose independent | sin | 14 | NA |
| 127 | 14.28 | temperature | 25 | 270 | < th | dose dependent | sin | 18 | NA |
| 148 | 14.32 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 151 | 14.33 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 19 |
| 152 | 14.33 | temperature | 25 | 90 | < th | dose dependent | sin | 16 | NA |
| 178 | 14.38 | temperature | 20 | 90 | < th | dose independent | rect. | 19 | 9 |
| 183 | 14.39 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 13 |
| 198 | 14.40 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 229 | 14.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 9 |
| 240 | 14.45 | temperature | 20 | 10 | < th | dose independent | rect. | 20 | 8 |
| 247 | 14.45 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 11 |
| 265 | 14.47 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 7 |
| 282 | 14.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 298 | 14.49 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 4 |
| 301 | 14.49 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 11 |
| 317 | 14.50 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 326 | 14.51 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 11 |
| 339 | 14.52 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 22 |
| 382 | 14.55 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 13 |
| 399 | 14.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 10 | 16 |
| 401 | 14.56 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 3 |
| 430 | 14.57 | temperature | 20 | 720 | > th | dose independent | rect. | 11 | 15 |
| 432 | 14.57 | temperature | 20 | 30 | > th | dose independent | rect. | 5 | 23 |
| 468 | 14.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 2 |
| 520 | 14.62 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 23 |
| 561 | 14.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 567 | 14.65 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 586 | 14.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 602 | 14.68 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 13 |
| 657 | 14.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 10 |
| 665 | 14.71 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 713 | 14.73 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 728 | 14.74 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 21 |
| 732 | 14.74 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 747 | 14.75 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 749 | 14.75 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 770 | 14.75 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 12 |
| 776 | 14.75 | temperature | 20 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 957 | 14.80 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 22 |
| 959 | 14.80 | temperature | 20 | 1440 | < th | dose dependent | sin | 8 | NA |
| 976 | 14.81 | temperature | 20 | 270 | < th | dose independent | rect. | 23 | 1 |