Os02g0290500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin.
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Os02g0290500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.05 | 0.37 | 8.76 | 0.427 | 1.14 | 1.3 | 0.798 | -1.57 | -0.212 | 17.6 | 14.9 | 685 | -- | -- |
| 63.96 | 0.372 | 8.73 | 0.685 | 1.14 | 1.3 | 0.564 | -- | -0.161 | 17.5 | 14.98 | 704 | -- | -- |
| 63.47 | 0.371 | 8.75 | 0.476 | 1.11 | 1.35 | -- | -1.25 | -0.198 | 17.6 | 14.79 | 638 | -- | -- |
| 64.28 | 0.373 | 8.71 | 0.75 | 0.984 | 1.39 | -- | -- | -0.118 | 18.2 | 10.48 | 397 | -- | -- |
| 95.3 | 0.455 | 8.72 | 0.483 | -- | 1.81 | -- | -1.58 | -0.187 | -- | 24.2 | 370 | -- | -- |
| 84.65 | 0.431 | 8.68 | 1.03 | 1.39 | -- | 0.665 | -- | 0.0615 | 18.1 | -- | -- | -- | -- |
| 85.73 | 0.434 | 8.68 | 1.03 | 1.4 | -- | -- | -- | 0.0637 | 18.1 | -- | -- | -- | -- |
| 98.67 | 0.463 | 8.7 | 0.688 | -- | 1.74 | -- | -- | -0.149 | -- | 24.1 | 356 | -- | -- |
| 76.51 | 0.407 | 8.74 | -- | 0.919 | 1.71 | -- | -- | -0.261 | 18.1 | 11.26 | 458 | -- | -- |
| 186.76 | 0.639 | 8.66 | 0.986 | -- | -- | -- | -- | 0.0326 | -- | -- | -- | -- | -- |
| 113.46 | 0.498 | 8.71 | -- | 1.38 | -- | -- | -- | -0.0505 | 18.2 | -- | -- | -- | -- |
| 108.58 | 0.485 | 8.75 | -- | -- | 2.53 | -- | -- | -0.37 | -- | 11.11 | 386 | -- | -- |
| 212.43 | 0.68 | 8.68 | -- | -- | -- | -- | -- | -0.0769 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 5 | 56.49 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 11 | 56.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 12 | 56.67 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 13 | 56.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 13 |
| 15 | 56.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 16 | 56.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 51 | 57.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 9 |
| 157 | 58.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 237 | 59.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 462 | 60.44 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 526 | 60.85 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 536 | 60.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 21 |
| 561 | 61.04 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 19 |
| 692 | 61.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 778 | 62.14 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 818 | 62.30 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 13 |
| 879 | 62.63 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 880 | 62.64 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 3 |
| 883 | 62.65 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 884 | 62.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 887 | 62.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 888 | 62.65 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 5 |
| 915 | 62.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |