Os02g0289300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os02g0289300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.26 | 0.302 | 7.64 | -0.84 | 0.213 | -0.126 | -0.952 | -2 | -0.148 | 11.5 | 20.7 | 3808 | -- | -- |
| 46.1 | 0.316 | 7.71 | -1.14 | 0.167 | 0.329 | -1.21 | -- | -0.235 | 11.4 | 18.79 | 3778 | -- | -- |
| 44.99 | 0.312 | 7.64 | -0.824 | 0.227 | -0.107 | -- | -2 | -0.144 | 12.5 | 21.1 | 3792 | -- | -- |
| 50.48 | 0.331 | 7.72 | -1.19 | 0.217 | 0.404 | -- | -- | -0.243 | 12.7 | 16.34 | 5172 | -- | -- |
| 48.03 | 0.323 | 7.64 | -0.804 | -- | -0.0718 | -- | -2.05 | -0.132 | -- | 21.16 | 3677 | -- | -- |
| 47.54 | 0.323 | 7.73 | -1.32 | 0.209 | -- | -1.07 | -- | -0.289 | 11.6 | -- | -- | -- | -- |
| 52.34 | 0.339 | 7.73 | -1.36 | 0.221 | -- | -- | -- | -0.292 | 12.6 | -- | -- | -- | -- |
| 53.13 | 0.339 | 7.72 | -1.16 | -- | 0.496 | -- | -- | -0.247 | -- | 16.1 | 6652 | -- | -- |
| 56.71 | 0.351 | 7.65 | -- | 0.236 | 1.12 | -- | -- | 0.0547 | 12 | 16.54 | 47520 | -- | -- |
| 55.39 | 0.348 | 7.74 | -1.37 | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
| 101.27 | 0.471 | 7.7 | -- | 0.242 | -- | -- | -- | -0.14 | 12.9 | -- | -- | -- | -- |
| 59.36 | 0.359 | 7.65 | -- | -- | 1.14 | -- | -- | 0.0737 | -- | 16.57 | 47520 | -- | -- |
| 104.92 | 0.478 | 7.7 | -- | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.01 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 5 | 35.70 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 29 | 37.32 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 2 |
| 31 | 37.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 104 | 38.84 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 150 | 39.59 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 153 | 39.63 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 155 | 39.66 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 200 | 39.99 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 204 | 40.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 214 | 40.09 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 234 | 40.22 | wind | 9 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 319 | 40.62 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 324 | 40.63 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 326 | 40.63 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 343 | 40.67 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 357 | 40.72 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 368 | 40.75 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 400 | 40.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 3 |
| 403 | 40.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 410 | 40.87 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 411 | 40.87 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 427 | 40.91 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 15 |
| 455 | 40.97 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 459 | 40.97 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 465 | 40.98 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 473 | 40.99 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 13 | 3 |
| 476 | 40.99 | atmosphere | 1010 | 14400 | > th | dose dependent | rect. | 11 | 5 |
| 493 | 41.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 11 |
| 551 | 41.07 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 603 | 41.12 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 7 |
| 604 | 41.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 610 | 41.13 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 646 | 41.16 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 653 | 41.17 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 676 | 41.18 | atmosphere | 1010 | 14400 | > th | dose dependent | sin | 20 | NA |
| 682 | 41.19 | wind | 3 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 694 | 41.20 | wind | 9 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 794 | 41.27 | temperature | 25 | 720 | < th | dose dependent | sin | 9 | NA |
| 808 | 41.28 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 809 | 41.28 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 977 | 41.37 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |