FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0288700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0455) R2 : 0.00435
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.135 (0.0957) R2dN8 : 0.00562 R2N8 : 0.00435
σ : 0.856
deviance : 336.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.42 0.815 3.01 -0.0328 0.163 10.3 -0.329 -20.4 -0.102 13.6 0.1 10 21 5
328.44 0.851 2.99 -0.0554 0.126 2.78 0.134 -- -0.133 10.8 0.1 10 21 5
306.67 0.816 3.01 -0.0458 0.168 10.3 -- -20 -0.107 12.3 0.1091 10 21.2 4.99
318.93 0.832 2.99 -0.0433 0.153 3.4 -- -- -0.119 11.9 0.1797 5 20.9 6.39
306.55 0.815 3.01 -0.0439 -- 10.1 -- -19.7 -0.104 -- 0.1254 10 21.2 4.72
335.9 0.859 2.99 -0.00519 0.104 -- -0.103 -- -0.134 12.5 -- -- -- --
335.93 0.858 2.99 -0.00955 0.105 -- -- -- -0.135 11.9 -- -- -- --
316.63 0.829 3 0.14 -- 4.17 -- -- -0.125 -- 0.01323 5 21.2 4.73
318.98 0.832 2.99 -- 0.154 3.39 -- -- -0.114 11.9 0.1796 5 20.8 6.4
336.63 0.857 2.99 -0.0127 -- -- -- -- -0.137 -- -- -- -- --
335.94 0.857 2.99 -- 0.105 -- -- -- -0.134 11.9 -- -- -- --
315.74 0.828 2.99 -- -- 4.1 -- -- -0.118 -- 0.0152 5 21.2 4.7
336.63 0.856 2.99 -- -- -- -- -- -0.135 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 306.42 precipitation 0.1 10 > th dose independent rect. 21 5
5 306.42 precipitation 0.1 10 > th dose dependent rect. 21 5
17 310.21 precipitation 0.1 90 > th dose independent rect. 1 2
18 310.21 precipitation 0.1 90 > th dose dependent rect. 1 2
21 310.29 precipitation 0.1 10 > th dose independent rect. 1 1
31 310.29 precipitation 0.1 10 > th dose dependent rect. 1 1
69 314.74 precipitation 0.1 10 > th dose independent rect. 7 19
73 314.74 precipitation 0.1 10 > th dose dependent rect. 7 19
77 315.19 wind 1.0 720 < th dose dependent rect. 2 1
118 315.81 wind 1.0 90 < th dose dependent rect. 2 1
120 317.39 temperature 20.0 10 < th dose dependent rect. 2 1
124 317.69 wind 1.0 90 < th dose independent rect. 2 1
125 317.70 temperature 25.0 30 > th dose dependent rect. 7 1
129 318.26 temperature 25.0 30 > th dose independent rect. 7 1
136 319.05 wind 3.0 10 > th dose independent rect. 2 1
140 319.71 humidity 60.0 10 < th dose independent rect. 14 1
152 320.48 wind 1.0 720 < th dose independent rect. 2 1
155 320.72 wind 1.0 4320 < th dose dependent rect. 2 2
166 321.33 atmosphere 1005.0 90 < th dose independent rect. 2 6
169 321.39 radiation 10.0 4320 > th dose dependent rect. 5 1
194 321.73 atmosphere 1000.0 90 < th dose independent rect. 16 2
197 321.75 atmosphere 1000.0 10 < th dose independent rect. 17 1
204 321.75 atmosphere 1000.0 10 < th dose dependent rect. 17 1
212 321.84 atmosphere 1005.0 30 > th dose independent rect. 18 22
214 321.91 temperature 20.0 720 < th dose independent rect. 15 1
217 322.00 atmosphere 1005.0 10 < th dose independent rect. 3 1
225 322.01 radiation 10.0 1440 > th dose independent rect. 12 1
229 322.15 atmosphere 1005.0 90 > th dose independent rect. 11 22
233 322.22 temperature 30.0 90 > th dose independent rect. 16 1
238 322.38 radiation 20.0 30 > th dose dependent rect. 7 1
263 322.77 radiation 20.0 1440 < th dose dependent rect. 12 1
267 322.85 atmosphere 1005.0 90 > th dose independent rect. 11 20
269 322.90 humidity 90.0 90 > th dose independent rect. 24 1
272 322.95 atmosphere 1005.0 90 < th dose independent rect. 24 1
273 322.98 precipitation 0.1 10 > th dose independent rect. 7 11
277 322.98 temperature 30.0 90 > th dose independent rect. 16 17
278 322.98 precipitation 0.1 10 > th dose dependent rect. 7 11
283 323.01 wind 7.0 1440 < th dose independent rect. 14 1
311 323.17 humidity 90.0 10 > th dose independent rect. 17 1
319 323.17 precipitation 0.1 10 > th dose independent rect. 17 1
356 323.17 humidity 90.0 10 > th dose dependent rect. 17 1
359 323.17 precipitation 0.1 10 > th dose dependent rect. 17 1
405 323.44 atmosphere 1005.0 90 < th dose independent rect. 6 22
407 323.47 atmosphere 1005.0 90 < th dose independent rect. 24 22
408 323.51 temperature 20.0 30 < th dose independent rect. 1 1
411 323.53 wind 9.0 14400 > th dose dependent rect. 18 2
416 323.61 wind 7.0 90 > th dose independent rect. 21 2
420 323.65 wind 3.0 10 < th dose independent rect. 12 2
423 323.67 temperature 30.0 90 > th dose independent rect. 16 3
437 323.68 radiation 10.0 1440 < th dose independent rect. 12 1
438 323.72 wind 7.0 1440 > th dose independent rect. 14 1
445 323.78 wind 3.0 10 < th dose dependent rect. 7 15
448 323.80 wind 3.0 10 < th dose dependent rect. 12 8
463 323.92 wind 3.0 10 < th dose dependent rect. 7 13
469 323.96 atmosphere 1005.0 90 < th dose independent rect. 11 22
487 324.14 radiation 10.0 4320 > th dose independent rect. 5 1
500 324.16 atmosphere 1005.0 30 > th dose independent rect. 3 23
501 324.16 temperature 25.0 30 > th dose dependent rect. 4 4
523 324.23 atmosphere 1005.0 30 > th dose independent rect. 8 23
543 324.43 atmosphere 1005.0 1440 > th dose independent rect. 1 1
579 324.54 atmosphere 1005.0 720 > th dose independent rect. 11 2
581 324.54 atmosphere 1005.0 30 > th dose independent rect. 18 13
587 324.56 wind 3.0 10 < th dose dependent rect. 12 2
591 324.58 atmosphere 1005.0 90 < th dose independent rect. 2 9
595 324.60 atmosphere 1005.0 270 < th dose independent rect. 24 8
600 324.65 radiation 1.0 720 > th dose independent rect. 8 8
606 324.67 wind 3.0 10 < th dose dependent rect. 10 10
607 324.68 radiation 10.0 1440 < th dose independent rect. 12 3
609 324.70 humidity 90.0 90 > th dose dependent rect. 24 1
610 324.72 wind 3.0 10 < th dose independent rect. 7 15
611 324.73 atmosphere 1005.0 90 < th dose independent rect. 16 16
618 324.76 wind 3.0 10 < th dose dependent rect. 10 12
621 324.78 atmosphere 1005.0 90 < th dose independent rect. 16 23
623 324.80 atmosphere 1005.0 30 > th dose independent no NA NA
624 324.80 atmosphere 1005.0 90 < th dose independent rect. 18 20
627 324.80 wind 7.0 90 > th dose dependent rect. 21 3
645 324.89 humidity 90.0 10 > th dose dependent rect. 24 3
652 324.92 wind 3.0 1440 < th dose independent rect. 19 2
654 324.94 atmosphere 1005.0 90 < th dose independent rect. 11 16
665 324.99 wind 7.0 10 > th dose independent rect. 12 1
678 325.01 wind 3.0 10 < th dose dependent sin 20 NA
680 325.03 wind 3.0 30 < th dose independent rect. 7 13
699 325.08 wind 7.0 720 < th dose independent rect. 13 17
701 325.08 radiation 10.0 1440 < th dose dependent rect. 9 6
710 325.12 atmosphere 1005.0 30 > th dose independent rect. 18 15
723 325.13 radiation 30.0 1440 > th dose dependent rect. 7 1
772 325.20 temperature 15.0 1440 < th dose independent rect. 2 1
778 325.21 wind 3.0 720 > th dose independent rect. 17 5
822 325.30 atmosphere 1005.0 90 > th dose independent rect. 24 23
847 325.42 wind 3.0 720 < th dose independent rect. 16 5
855 325.44 atmosphere 1005.0 90 < th dose independent no NA NA
904 325.47 radiation 20.0 30 > th dose independent rect. 7 1
925 325.48 atmosphere 1015.0 10 < th dose dependent rect. 16 12
933 325.51 atmosphere 1005.0 1440 < th dose independent rect. 1 1
936 325.51 atmosphere 1005.0 90 > th dose independent rect. 21 23
938 325.52 wind 3.0 1440 > th dose independent rect. 19 2
982 325.59 temperature 20.0 720 < th dose dependent rect. 15 1
996 325.65 radiation 10.0 270 > th dose independent rect. 7 1