Os02g0286900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0286900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 486.35 | 1.04 | 8.54 | -7.49 | 1.51 | 7.22 | 0.895 | -5.88 | -1.23 | 3.89 | 12.35 | 1843 | -- | -- |
| 514.84 | 1.06 | 8.37 | -6.14 | 1.46 | 7.16 | 0.779 | -- | -0.891 | 3.58 | 13.51 | 1751 | -- | -- |
| 488.6 | 1.03 | 8.53 | -7.45 | 1.51 | 7.22 | -- | -5.79 | -1.22 | 3.73 | 12.42 | 1812 | -- | -- |
| 516.8 | 1.06 | 8.37 | -6.15 | 1.46 | 7.2 | -- | -- | -0.883 | 3.42 | 13.55 | 1730 | -- | -- |
| 525.97 | 1.07 | 8.52 | -7.39 | -- | 7.47 | -- | -5.71 | -1.2 | -- | 15.38 | 1252 | -- | -- |
| 1374.02 | 1.74 | 8.07 | -3.82 | 1.36 | -- | 0.772 | -- | 0.454 | 2.76 | -- | -- | -- | -- |
| 1376.06 | 1.74 | 8.08 | -3.84 | 1.36 | -- | -- | -- | 0.45 | 2.71 | -- | -- | -- | -- |
| 549.03 | 1.09 | 8.37 | -6.07 | -- | 7.41 | -- | -- | -0.853 | -- | 13.85 | 1254 | -- | -- |
| 1350.37 | 1.71 | 8.21 | -- | 1.06 | 3.72 | -- | -- | 0.394 | 2.83 | 19.99 | 1239 | -- | -- |
| 1483.12 | 1.8 | 8.07 | -3.79 | -- | -- | -- | -- | 0.484 | -- | -- | -- | -- | -- |
| 1765.36 | 1.97 | 7.98 | -- | 1.28 | -- | -- | -- | 0.878 | 2.68 | -- | -- | -- | -- |
| 1359.65 | 1.72 | 8.13 | -- | -- | 3.83 | -- | -- | 0.188 | -- | 20.9 | 1194 | -- | -- |
| 1861.1 | 2.01 | 7.98 | -- | -- | -- | -- | -- | 0.904 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 486.89 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 40 | 490.85 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 46 | 491.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 52 | 491.89 | temperature | 15 | 1440 | > th | dose dependent | no | NA | NA |
| 57 | 492.11 | temperature | 15 | 1440 | > th | dose dependent | rect. | 7 | 23 |
| 63 | 492.27 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 70 | 492.47 | temperature | 15 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 81 | 492.83 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 91 | 493.03 | temperature | 15 | 1440 | > th | dose dependent | sin | 15 | NA |
| 121 | 493.51 | temperature | 15 | 1440 | > th | dose dependent | rect. | 16 | 9 |
| 188 | 495.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 209 | 495.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 250 | 496.10 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 254 | 496.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 257 | 496.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 276 | 496.57 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 354 | 497.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 419 | 499.25 | temperature | 30 | 1440 | < th | dose dependent | sin | 15 | NA |
| 776 | 506.59 | temperature | 15 | 1440 | > th | dose dependent | sin | 5 | NA |