Os02g0286700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Chlorophyllase family protein.
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Os02g0286700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Chlorophyllase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 353.2 | 0.883 | 3.46 | -0.619 | 0.244 | -0.41 | 0.627 | -0.248 | -0.569 | 10.2 | 1005 | 1072 | -- | -- |
| 353.42 | 0.876 | 3.46 | -0.612 | 0.246 | -0.415 | 0.612 | -- | -0.565 | 10.1 | 1005 | 1072 | -- | -- |
| 354.71 | 0.877 | 3.46 | -0.595 | 0.244 | -0.407 | -- | -0.188 | -0.57 | 9.76 | 1005 | 1071 | -- | -- |
| 354.83 | 0.877 | 3.46 | -0.594 | 0.244 | -0.414 | -- | -- | -0.562 | 9.75 | 1005 | 1071 | -- | -- |
| 358.23 | 0.882 | 3.46 | -0.587 | -- | -0.391 | -- | -0.183 | -0.56 | -- | 1005 | 1091 | -- | -- |
| 363.07 | 0.893 | 3.49 | -0.605 | 0.224 | -- | 0.591 | -- | -0.706 | 10 | -- | -- | -- | -- |
| 364.38 | 0.894 | 3.49 | -0.583 | 0.227 | -- | -- | -- | -0.705 | 9.44 | -- | -- | -- | -- |
| 358.34 | 0.882 | 3.47 | -0.599 | -- | -0.402 | -- | -- | -0.561 | -- | 1005 | 1091 | -- | -- |
| 363.95 | 0.889 | 3.45 | -- | 0.248 | -0.407 | -- | -- | -0.516 | 9.79 | 1005 | 1048 | -- | -- |
| 367.4 | 0.896 | 3.5 | -0.585 | -- | -- | -- | -- | -0.705 | -- | -- | -- | -- | -- |
| 373.34 | 0.904 | 3.48 | -- | 0.228 | -- | -- | -- | -0.64 | 9.64 | -- | -- | -- | -- |
| 367.58 | 0.893 | 3.46 | -- | -- | -0.395 | -- | -- | -0.52 | -- | 1005 | 1050 | -- | -- |
| 376.41 | 0.906 | 3.48 | -- | -- | -- | -- | -- | -0.64 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 338.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 5 | 340.84 | atmosphere | 1005.0 | 270 | < th | dose dependent | rect. | 4 | 5 |
| 10 | 341.43 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 7 | 1 |
| 12 | 341.52 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 30 | 342.44 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 5 | 4 |
| 59 | 343.36 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 13 |
| 86 | 344.34 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 5 |
| 95 | 344.55 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 96 | 344.56 | temperature | 25.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 97 | 344.58 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 2 |
| 121 | 345.00 | radiation | 30.0 | 30 | > th | dose independent | rect. | 13 | 1 |
| 145 | 345.55 | atmosphere | 1015.0 | 720 | < th | dose dependent | rect. | 2 | 6 |
| 151 | 345.62 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 167 | 345.87 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 24 | 5 |
| 197 | 346.22 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 24 | 13 |
| 266 | 346.90 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 3 | 2 |
| 268 | 346.91 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 275 | 347.00 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 24 | 8 |
| 311 | 347.16 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 24 | 9 |
| 331 | 347.35 | humidity | 60.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 346 | 347.35 | atmosphere | 1000.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 350 | 347.38 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 424 | 347.80 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 2 | 3 |
| 445 | 347.91 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 3 | 13 |
| 462 | 348.03 | atmosphere | 1005.0 | 270 | > th | dose independent | sin | 4 | NA |
| 479 | 348.12 | atmosphere | 1005.0 | 270 | < th | dose independent | sin | 5 | NA |
| 513 | 348.26 | atmosphere | 1000.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 519 | 348.29 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 5 | 9 |
| 520 | 348.29 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 5 | 9 |
| 560 | 348.31 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 584 | 348.42 | atmosphere | 995.0 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 586 | 348.43 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 13 | 1 |
| 595 | 348.50 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 10 |
| 626 | 348.73 | atmosphere | 1005.0 | 720 | > th | dose independent | sin | 9 | NA |
| 662 | 348.89 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 13 | 1 |
| 665 | 348.90 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 13 | 22 |
| 672 | 348.94 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 9 |
| 687 | 349.01 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 13 | 22 |
| 704 | 349.09 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 18 | 17 |
| 705 | 349.10 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 5 | 5 |
| 715 | 349.14 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 2 |
| 754 | 349.25 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 3 | 10 |
| 766 | 349.29 | radiation | 20.0 | 30 | > th | dose dependent | rect. | 13 | 19 |
| 789 | 349.40 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 7 | 11 |
| 833 | 349.57 | humidity | 80.0 | 30 | < th | dose independent | rect. | 13 | 1 |
| 842 | 349.59 | atmosphere | 1005.0 | 720 | < th | dose independent | sin | 9 | NA |
| 843 | 349.59 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 19 | 13 |
| 848 | 349.60 | temperature | 15.0 | 720 | > th | dose independent | rect. | 2 | 15 |
| 854 | 349.62 | humidity | 60.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 872 | 349.67 | atmosphere | 1005.0 | 10 | < th | dose dependent | sin | 3 | NA |
| 876 | 349.68 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 877 | 349.69 | temperature | 15.0 | 720 | > th | dose independent | rect. | 14 | 15 |
| 919 | 349.81 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 2 | 15 |
| 924 | 349.81 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 2 | 15 |
| 935 | 349.85 | atmosphere | 1010.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 980 | 349.94 | radiation | 40.0 | 30 | < th | dose independent | sin | 13 | NA |