Os02g0283800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SERK1 (Fragment).
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Os02g0283800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SERK1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.05 | 0.315 | 10 | -0.204 | 0.492 | -0.596 | -0.76 | 1.6 | -0.044 | 9.01 | 54.92 | 85 | -- | -- |
| 45.74 | 0.315 | 10 | -0.223 | 0.502 | -1.03 | -0.619 | -- | -0.0376 | 8.93 | 56.1 | 85 | -- | -- |
| 46.83 | 0.319 | 10 | -0.215 | 0.483 | -0.723 | -- | 0.946 | -0.0437 | 9.15 | 55.53 | 85 | -- | -- |
| 47.06 | 0.32 | 10 | -0.214 | 0.495 | -1.01 | -- | -- | -0.0374 | 9.19 | 56.25 | 85 | -- | -- |
| 57.5 | 0.353 | 10 | -0.257 | -- | -0.624 | -- | 0.96 | 0.00044 | -- | 53.03 | 982 | -- | -- |
| 52.24 | 0.339 | 9.99 | -0.116 | 0.438 | -- | -0.532 | -- | -0.00232 | 8.41 | -- | -- | -- | -- |
| 53.07 | 0.341 | 9.99 | -0.131 | 0.437 | -- | -- | -- | -0.00137 | 8.69 | -- | -- | -- | -- |
| 57.35 | 0.353 | 10 | -0.23 | -- | -0.721 | -- | -- | -0.0438 | -- | 53.61 | 1020 | -- | -- |
| 48.31 | 0.324 | 9.99 | -- | 0.489 | -0.924 | -- | -- | -0.014 | 9.2 | 56.08 | 85 | -- | -- |
| 63.88 | 0.373 | 10 | -0.13 | -- | -- | -- | -- | 0.00228 | -- | -- | -- | -- | -- |
| 53.52 | 0.342 | 9.99 | -- | 0.437 | -- | -- | -- | 0.0132 | 8.71 | -- | -- | -- | -- |
| 58.28 | 0.356 | 10 | -- | -- | -0.648 | -- | -- | -0.00112 | -- | 52.79 | 1020 | -- | -- |
| 64.32 | 0.374 | 10 | -- | -- | -- | -- | -- | 0.0167 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.95 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 39.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 20 | 39.99 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 22 | 40.03 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 31 | 40.26 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 35 | 40.34 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 78 | 40.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 93 | 41.08 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 7 |
| 100 | 41.18 | temperature | 20 | 720 | < th | dose independent | rect. | 2 | 5 |
| 136 | 41.45 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 174 | 41.79 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 186 | 41.85 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 5 |
| 189 | 41.89 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 217 | 42.09 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 7 |
| 219 | 42.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 239 | 42.23 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 7 |
| 362 | 42.92 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 15 |
| 366 | 42.95 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 5 |
| 382 | 43.03 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 10 |
| 385 | 43.04 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 2 |
| 410 | 43.17 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 420 | 43.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 430 | 43.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 2 |
| 476 | 43.39 | temperature | 15 | 720 | > th | dose dependent | sin | 6 | NA |
| 501 | 43.49 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 12 |
| 523 | 43.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 535 | 43.62 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 569 | 43.73 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 632 | 43.90 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 666 | 43.98 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 7 |
| 667 | 43.98 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 9 |
| 686 | 44.02 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 703 | 44.07 | wind | 1 | 10 | > th | dose independent | rect. | 12 | 23 |
| 708 | 44.08 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 8 |
| 726 | 44.12 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 16 |
| 727 | 44.12 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 18 |
| 728 | 44.13 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 7 |
| 784 | 44.27 | wind | 1 | 10 | > th | dose independent | rect. | 1 | 10 |
| 822 | 44.36 | temperature | 30 | 10 | < th | dose independent | rect. | 11 | 3 |
| 894 | 44.49 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 16 |
| 906 | 44.52 | temperature | 10 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 909 | 44.52 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 911 | 44.52 | temperature | 10 | 1440 | > th | dose independent | rect. | 12 | 16 |
| 926 | 44.55 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 5 |
| 948 | 44.59 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 5 |
| 960 | 44.61 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 14 |