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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0282500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.33 (0.0409) R2 : 0.136
β1 : 0.926 (0.167) R2dD : 0.077 R2D : -0.0171
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.78 (0.225) R2dE : 0.158 R2E : 0.0615
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0826 (0.0912) R2dN8 : 0.00231 R2N8 : -0.01
σ : 0.755
deviance : 262.77
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 59.22
memory length : 5874
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.17 0.752 3.34 0.194 0.47 0.67 0.13 -3.97 -0.19 5.91 35.61 4411 -- --
260.04 0.751 3.4 0.5 0.349 1.18 -0.244 -- -0.114 7.41 59.1 5906 -- --
256.22 0.746 3.34 0.195 0.47 0.671 -- -3.97 -0.19 5.91 35.8 4410 -- --
250.93 0.738 3.32 0.909 0.472 1.78 -- -- 0.0689 5.97 59.19 5878 -- --
267.68 0.762 3.35 0.219 -- 0.694 -- -3.92 -0.171 -- 36.25 4410 -- --
287.08 0.794 3.37 0.3 0.474 -- 0.0853 -- -0.163 6.25 -- -- -- --
287.1 0.793 3.37 0.301 0.475 -- -- -- -0.164 6.27 -- -- -- --
262.77 0.755 3.33 0.926 -- 1.78 -- -- 0.0826 -- 59.22 5874 -- --
267.95 0.762 3.36 -- 0.482 1.29 -- -- -0.038 6.16 59.79 5876 -- --
298.8 0.808 3.38 0.314 -- -- -- -- -0.153 -- -- -- -- --
289.48 0.796 3.38 -- 0.479 -- -- -- -0.197 6.23 -- -- -- --
279.77 0.779 3.36 -- -- 1.26 -- -- -0.0708 -- 60 5873 -- --
301.39 0.81 3.39 -- -- -- -- -- -0.188 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 250.28 radiation 40 4320 < th dose independent rect. 15 2
4 251.29 humidity 60 4320 < th dose dependent rect. 10 1
5 251.51 radiation 40 4320 < th dose independent rect. 15 13
9 251.84 radiation 40 4320 < th dose independent rect. 15 5
16 253.08 radiation 40 4320 < th dose independent rect. 15 7
18 253.52 humidity 60 4320 < th dose dependent rect. 19 18
38 253.92 humidity 60 4320 < th dose dependent sin 7 NA
55 254.40 humidity 60 4320 < th dose independent rect. 10 1
58 254.56 radiation 40 4320 < th dose independent rect. 10 3
96 255.16 radiation 30 4320 > th dose dependent rect. 10 3
99 255.34 wind 1 14400 < th dose dependent rect. 16 1
113 255.45 humidity 60 14400 > th dose independent rect. 19 1
114 255.77 humidity 60 14400 < th dose independent rect. 19 1
115 255.77 wind 1 14400 < th dose dependent rect. 13 4
116 255.83 humidity 60 14400 > th dose independent rect. 10 1
117 255.86 radiation 40 4320 < th dose independent rect. 10 5
118 255.95 humidity 50 43200 > th dose independent rect. 17 16
128 256.22 humidity 60 14400 > th dose independent rect. 7 1
130 256.24 humidity 60 14400 < th dose dependent rect. 19 1
135 256.38 radiation 30 4320 > th dose dependent rect. 10 5
138 256.48 radiation 40 4320 < th dose independent rect. 10 20
141 256.50 radiation 40 4320 < th dose independent rect. 10 11
155 256.54 humidity 60 43200 < th dose dependent rect. 18 5
161 256.57 humidity 60 4320 < th dose independent rect. 19 16
184 256.74 humidity 80 14400 > th dose independent rect. 1 2
186 256.76 humidity 60 14400 < th dose independent rect. 6 1
190 256.76 radiation 20 14400 > th dose independent rect. 17 1
241 256.76 humidity 60 14400 < th dose dependent rect. 6 1
245 256.76 radiation 20 14400 > th dose dependent rect. 17 1
297 256.78 wind 1 14400 < th dose independent rect. 16 1
299 256.80 humidity 50 43200 < th dose dependent rect. 17 1
305 256.89 humidity 80 14400 < th dose independent rect. 2 1
307 256.92 radiation 30 4320 > th dose dependent rect. 14 23
311 256.98 radiation 40 4320 > th dose independent rect. 10 22
312 256.99 radiation 40 4320 > th dose independent rect. 10 6
334 257.07 radiation 40 4320 < th dose independent rect. 14 23
337 257.13 humidity 50 43200 < th dose independent rect. 17 16
370 257.23 humidity 60 14400 > th dose independent rect. 4 4
374 257.26 humidity 50 4320 > th dose independent rect. 24 13
378 257.27 humidity 50 4320 > th dose independent rect. 19 18
380 257.30 radiation 40 4320 < th dose independent rect. 16 21
382 257.32 radiation 40 4320 < th dose independent rect. 18 19
385 257.33 humidity 50 4320 > th dose independent rect. 8 5
386 257.33 radiation 40 4320 < th dose independent rect. 4 9
390 257.33 humidity 50 4320 > th dose independent rect. 21 16
394 257.34 radiation 40 4320 < th dose independent rect. 21 16
397 257.35 radiation 40 4320 < th dose independent rect. 7 6
430 257.39 humidity 50 4320 > th dose independent rect. 4 9
447 257.50 radiation 30 4320 > th dose dependent rect. 16 21
448 257.52 humidity 50 43200 < th dose dependent rect. 16 6
470 257.56 humidity 50 14400 < th dose independent rect. 17 1
492 257.63 humidity 60 14400 < th dose independent rect. 10 6
557 257.83 radiation 40 4320 < th dose independent sin 2 NA
582 257.88 radiation 30 4320 > th dose dependent sin 1 NA
613 257.98 wind 1 14400 > th dose independent rect. 16 1
705 258.15 radiation 30 4320 > th dose dependent no NA NA
826 258.16 humidity 60 14400 > th dose independent rect. 10 6
837 258.21 humidity 60 14400 > th dose independent rect. 20 12
857 258.27 humidity 60 4320 < th dose independent sin 8 NA
858 258.27 radiation 40 4320 > th dose independent sin 22 NA