Os02g0282100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0282100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.04 | 0.278 | 11.6 | 0.46 | 0.892 | 0.566 | 0.284 | -0.532 | -0.0928 | 17.6 | 10.44 | 109 | -- | -- |
| 36.31 | 0.281 | 11.6 | 0.461 | 0.875 | 0.561 | 0.174 | -- | -0.0866 | 17.5 | 10.61 | 120 | -- | -- |
| 35.11 | 0.276 | 11.6 | 0.451 | 0.879 | 0.578 | -- | -0.473 | -0.091 | 17.6 | 10.29 | 119 | -- | -- |
| 36.33 | 0.281 | 11.6 | 0.456 | 0.876 | 0.557 | -- | -- | -0.0823 | 17.5 | 10.61 | 121 | -- | -- |
| 42.25 | 0.303 | 11.7 | 0.522 | -- | 1.02 | -- | -0.416 | -0.116 | -- | 2.19 | 452 | -- | -- |
| 44.11 | 0.311 | 11.6 | 0.538 | 1.2 | -- | -0.192 | -- | -0.0385 | 15.8 | -- | -- | -- | -- |
| 44.22 | 0.311 | 11.6 | 0.536 | 1.2 | -- | -- | -- | -0.0396 | 15.9 | -- | -- | -- | -- |
| 39.98 | 0.294 | 11.6 | 0.502 | -- | 1.24 | -- | -- | -0.0841 | -- | 2.17 | 495 | -- | -- |
| 41.77 | 0.301 | 11.6 | -- | 0.849 | 0.558 | -- | -- | -0.118 | 17.5 | 10.23 | 136 | -- | -- |
| 123.26 | 0.519 | 11.6 | 0.486 | -- | -- | -- | -- | -0.0716 | -- | -- | -- | -- | -- |
| 51.78 | 0.337 | 11.6 | -- | 1.19 | -- | -- | -- | -0.0993 | 15.9 | -- | -- | -- | -- |
| 46.11 | 0.316 | 11.6 | -- | -- | 1.22 | -- | -- | -0.144 | -- | 1.81 | 499 | -- | -- |
| 129.49 | 0.531 | 11.6 | -- | -- | -- | -- | -- | -0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.63 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 3 | 32.98 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 4 | 32.99 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 7 | 33.17 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 9 | 33.28 | humidity | 80.0 | 30 | > th | dose independent | rect. | 5 | 15 |
| 14 | 33.33 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 19 | 33.41 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 13 | 19 |
| 20 | 33.42 | humidity | 60.0 | 10 | > th | dose dependent | sin | 1 | NA |
| 21 | 33.42 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 39 | 33.63 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 16 |
| 46 | 33.69 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 50 | 33.73 | humidity | 80.0 | 270 | > th | dose independent | rect. | 1 | 18 |
| 84 | 33.92 | radiation | 40.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 89 | 33.95 | radiation | 20.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 90 | 33.96 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 20 |
| 96 | 34.00 | humidity | 80.0 | 30 | > th | dose independent | sin | 1 | NA |
| 106 | 34.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 116 | 34.08 | radiation | 10.0 | 90 | > th | dose independent | sin | 2 | NA |
| 118 | 34.08 | radiation | 10.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 125 | 34.12 | radiation | 20.0 | 270 | < th | dose dependent | sin | 5 | NA |
| 163 | 34.28 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 188 | 34.36 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 198 | 34.42 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 215 | 34.50 | humidity | 80.0 | 10 | < th | dose independent | sin | 2 | NA |
| 221 | 34.51 | radiation | 10.0 | 270 | > th | dose independent | sin | 5 | NA |
| 248 | 34.58 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 7 | 8 |
| 250 | 34.59 | radiation | 10.0 | 90 | > th | dose independent | rect. | 7 | 10 |
| 255 | 34.60 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 22 |
| 256 | 34.60 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 291 | 34.67 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 313 | 34.73 | radiation | 10.0 | 270 | < th | dose independent | sin | 5 | NA |
| 318 | 34.73 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 364 | 34.82 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 401 | 34.90 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 23 | 20 |
| 415 | 34.94 | radiation | 10.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 428 | 34.96 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 494 | 35.10 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 9 |
| 495 | 35.10 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 9 |
| 506 | 35.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 14 |
| 507 | 35.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 7 |
| 548 | 35.18 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 616 | 35.29 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 706 | 35.31 | humidity | 80.0 | 10 | < th | dose independent | rect. | 8 | 7 |
| 717 | 35.32 | humidity | 70.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 725 | 35.32 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 752 | 35.37 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 758 | 35.38 | radiation | 1.0 | 10 | > th | dose independent | rect. | 8 | 10 |
| 760 | 35.38 | radiation | 20.0 | 10 | < th | dose independent | rect. | 13 | 19 |
| 797 | 35.43 | humidity | 80.0 | 720 | < th | dose independent | rect. | 8 | 10 |
| 805 | 35.44 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 868 | 35.52 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 921 | 35.58 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 925 | 35.58 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 7 |
| 940 | 35.59 | humidity | 70.0 | 720 | > th | dose independent | rect. | 19 | 20 |
| 944 | 35.59 | radiation | 10.0 | 270 | < th | dose independent | rect. | 21 | 22 |
| 960 | 35.61 | humidity | 70.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 976 | 35.63 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 8 | 9 |