Os02g0282000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os02g0282000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 230.21 | 0.713 | 6.75 | 4.31 | 1.42 | -2.68 | -3.36 | 2.48 | 0.442 | 11.7 | 18.58 | 840 | 0.388 | -- |
| 237.31 | 0.717 | 6.79 | 4.1 | 1.42 | -2.67 | -2.92 | -- | 0.4 | 11.4 | 18.04 | 870 | 0.707 | -- |
| 277.49 | 0.776 | 6.76 | 4.14 | 1.42 | -2.52 | -- | 1.96 | 0.407 | 11 | 18.7 | 869 | 1.03 | -- |
| 275.77 | 0.773 | 6.82 | 3.73 | 1.58 | -2.71 | -- | -- | 0.322 | 11 | 18 | 857 | 1.14 | -- |
| 336.23 | 0.854 | 6.83 | 3.88 | -- | -2.23 | -- | 1.54 | 0.309 | -- | 18.9 | 1138 | 0.423 | -- |
| 368.72 | 0.9 | 6.94 | 3.09 | 0.982 | -- | -3.33 | -- | -0.255 | 9.95 | -- | -- | -- | -- |
| 408.47 | 0.946 | 6.94 | 2.95 | 1.05 | -- | -- | -- | -0.268 | 9.02 | -- | -- | -- | -- |
| 336.87 | 0.855 | 6.85 | 3.7 | -- | -2.35 | -- | -- | 0.267 | -- | 18.6 | 1126 | 1.2e-08 | -- |
| 593.81 | 1.13 | 6.95 | -- | 1.51 | -1.47 | -- | -- | -0.326 | 9.97 | 20 | 564 | 0.452 | -- |
| 471.77 | 1.01 | 6.97 | 2.95 | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
| 637.41 | 1.18 | 7.01 | -- | 1.05 | -- | -- | -- | -0.596 | 8.81 | -- | -- | -- | -- |
| 652.07 | 1.19 | 6.99 | -- | -- | -1.24 | -- | -- | -0.35 | -- | 21.8 | 957 | 0.00146 | -- |
| 700.67 | 1.24 | 7.04 | -- | -- | -- | -- | -- | -0.589 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 231.84 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 3 | 232.59 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 90 | 244.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 97 | 245.30 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 20 |
| 119 | 246.00 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 139 | 246.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 149 | 247.09 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 151 | 247.32 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 153 | 247.33 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 160 | 247.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 184 | 248.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 236 | 249.98 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 266 | 250.59 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 324 | 252.35 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 330 | 252.46 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 343 | 252.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 359 | 253.26 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 380 | 253.70 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 393 | 253.94 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 399 | 254.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 409 | 254.27 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 414 | 254.45 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 461 | 255.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 501 | 256.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 502 | 256.64 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 503 | 256.66 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 605 | 258.59 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 685 | 260.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 704 | 260.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 707 | 260.51 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 745 | 260.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 755 | 261.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 774 | 261.36 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 775 | 261.37 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 785 | 261.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 883 | 262.35 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 885 | 262.37 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 981 | 263.06 | temperature | 15 | 1440 | > th | dose dependent | sin | 13 | NA |