Os02g0281900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os02g0281900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 592.67 | 1.14 | 7.18 | 5.11 | 1.22 | 0.41 | -1.89 | 10.3 | 1.86 | 4.56 | 0.15 | 4690 | 20.7 | 21.2 |
| 599.18 | 1.14 | 7.3 | 4.51 | 1.28 | 2.06 | -2.01 | -- | 1.99 | 4.53 | 0.8658 | 22941 | 20.5 | 22.3 |
| 601.98 | 1.14 | 7.17 | 5.14 | 1.19 | 0.354 | -- | 10.2 | 1.87 | 4.54 | 0.1405 | 4807 | 20.7 | 21.3 |
| 606.79 | 1.15 | 7.32 | 4.59 | 1.31 | 1.95 | -- | -- | 1.92 | 4.16 | 1.035 | 23910 | 20 | 21.9 |
| 679.3 | 1.21 | 7.17 | 5.17 | -- | 0.348 | -- | 10.3 | 1.9 | -- | 0.1582 | 4839 | 20.8 | 21.7 |
| 711.97 | 1.25 | 7.35 | 5.74 | 1.24 | -- | -1.68 | -- | 1.79 | 4.47 | -- | -- | -- | -- |
| 719.6 | 1.26 | 7.34 | 5.76 | 1.23 | -- | -- | -- | 1.8 | 4.41 | -- | -- | -- | -- |
| 689.21 | 1.22 | 7.31 | 4.63 | -- | 2.07 | -- | -- | 2.04 | -- | 1.004 | 23792 | 19.7 | 22.1 |
| 870.07 | 1.37 | 7.3 | -- | 1.32 | 3.4 | -- | -- | 2 | 4.25 | 1.027 | 47369 | 19.8 | 23.5 |
| 800.81 | 1.32 | 7.35 | 5.8 | -- | -- | -- | -- | 1.83 | -- | -- | -- | -- | -- |
| 1592.98 | 1.87 | 7.49 | -- | 1.34 | -- | -- | -- | 1.16 | 4.32 | -- | -- | -- | -- |
| 975.58 | 1.45 | 7.3 | -- | -- | 3.43 | -- | -- | 2.06 | -- | 1 | 47520 | 19.9 | 22.1 |
| 1689.67 | 1.92 | 7.5 | -- | -- | -- | -- | -- | 1.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 589.10 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 7 | 592.87 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 8 | 592.87 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 11 | 593.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 21 | 595.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 5 |
| 22 | 595.07 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 5 |
| 23 | 595.07 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 25 | 595.34 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 29 | 595.46 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 63 | 597.31 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 80 | 597.72 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 20 | 18 |
| 97 | 597.87 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 117 | 598.01 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 22 | 16 |
| 168 | 598.31 | atmosphere | 1000.0 | 14400 | < th | dose independent | sin | 2 | NA |
| 181 | 598.35 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 2 | 14 |
| 209 | 598.58 | atmosphere | 1000.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 223 | 598.65 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 17 | NA |
| 265 | 598.94 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 283 | 599.06 | atmosphere | 1005.0 | 14400 | < th | dose dependent | rect. | 10 | 3 |
| 286 | 599.07 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 289 | 599.09 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 5 | 16 |
| 397 | 599.43 | atmosphere | 1000.0 | 14400 | < th | dose independent | no | NA | NA |
| 487 | 599.82 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 3 | 18 |
| 579 | 600.08 | atmosphere | 1000.0 | 14400 | > th | dose independent | no | NA | NA |
| 637 | 600.27 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 10 | 23 |
| 778 | 601.01 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 858 | 601.49 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 887 | 601.66 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 965 | 602.25 | atmosphere | 1005.0 | 14400 | < th | dose dependent | sin | 1 | NA |
| 988 | 602.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 4 |