Os02g0281200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR protein (Fragment).
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Os02g0281200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.8 | 0.443 | 7.55 | 3.39 | 0.524 | -1.19 | -0.86 | 1.02 | 0.77 | 6.68 | 22.26 | 951 | -- | -- |
| 89.83 | 0.441 | 7.58 | 3.2 | 0.509 | -1.15 | -0.888 | -- | 0.744 | 6.97 | 22.29 | 940 | -- | -- |
| 90.53 | 0.443 | 7.53 | 3.44 | 0.541 | -1.2 | -- | 1.31 | 0.791 | 6.43 | 22.21 | 967 | -- | -- |
| 91.74 | 0.446 | 7.57 | 3.12 | 0.558 | -1.09 | -- | -- | 0.706 | 6.54 | 22.11 | 979 | -- | -- |
| 97.38 | 0.46 | 7.54 | 3.52 | -- | -1.47 | -- | 1.72 | 0.833 | -- | 22.19 | 731 | -- | -- |
| 121.08 | 0.516 | 7.61 | 2.83 | 0.715 | -- | -0.848 | -- | 0.501 | 7.83 | -- | -- | -- | -- |
| 123.16 | 0.52 | 7.61 | 2.8 | 0.715 | -- | -- | -- | 0.502 | 7.85 | -- | -- | -- | -- |
| 99.37 | 0.464 | 7.58 | 3.19 | -- | -1.42 | -- | -- | 0.758 | -- | 20.34 | 712 | -- | -- |
| 326.26 | 0.841 | 7.7 | -- | 0.713 | -0.344 | -- | -- | 0.134 | 7.41 | 31.23 | 968 | -- | -- |
| 150.87 | 0.574 | 7.63 | 2.81 | -- | -- | -- | -- | 0.512 | -- | -- | -- | -- | -- |
| 330.34 | 0.85 | 7.68 | -- | 0.736 | -- | -- | -- | 0.19 | 7.58 | -- | -- | -- | -- |
| 344.24 | 0.864 | 7.69 | -- | -- | -0.718 | -- | -- | 0.241 | -- | 24.8 | 691 | -- | -- |
| 359.42 | 0.885 | 7.7 | -- | -- | -- | -- | -- | 0.2 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 2 | 86.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 3 | 86.96 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 4 | 87.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 6 | 87.27 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 12 | 87.86 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 18 | 87.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 27 | 88.28 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 13 | 20 |
| 31 | 88.48 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 34 | 88.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 36 | 88.54 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 9 |
| 38 | 88.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 47 | 88.69 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 10 |
| 52 | 88.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 64 | 88.95 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 70 | 89.00 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 74 | 89.04 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 84 | 89.14 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 14 | 15 |
| 92 | 89.20 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 96 | 89.23 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 105 | 89.28 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 112 | 89.36 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 141 | 89.57 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 162 | 89.69 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 7 | 21 |
| 257 | 90.07 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 265 | 90.11 | temperature | 20.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 284 | 90.20 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 308 | 90.29 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 316 | 90.31 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 327 | 90.34 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 358 | 90.42 | temperature | 25.0 | 720 | > th | dose dependent | sin | 11 | NA |
| 373 | 90.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 14 | 14 |
| 406 | 90.56 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 407 | 90.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 445 | 90.71 | temperature | 20.0 | 720 | > th | dose dependent | no | NA | NA |
| 462 | 90.79 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 479 | 90.85 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 499 | 90.91 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 503 | 90.93 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 507 | 90.95 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 3 | NA |
| 514 | 90.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 521 | 90.99 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 3 | NA |
| 570 | 91.09 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 573 | 91.09 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 590 | 91.12 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 10 | 18 |
| 676 | 91.23 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 694 | 91.26 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 881 | 91.41 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 982 | 91.49 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 983 | 91.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 984 | 91.49 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 20 | 1 |