Os02g0280300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Xyloglucan endotransglycosylase (Fragment).
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Os02g0280300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Xyloglucan endotransglycosylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.99 | 0.286 | 2.96 | 0.0869 | 0.0248 | 2.33 | 0.155 | 4.48 | 0.0961 | 12.3 | 17.12 | 728 | -- | -- |
| 40.47 | 0.296 | 2.93 | 0.118 | 0.0363 | 0.435 | 0.392 | -- | 0.112 | 11.6 | 19.25 | 758 | -- | -- |
| 37.02 | 0.283 | 2.96 | 0.0928 | 0.0379 | 2.48 | -- | 4.79 | 0.0923 | 15 | 17.02 | 598 | -- | -- |
| 41.05 | 0.298 | 2.93 | 0.133 | 0.0504 | 0.42 | -- | -- | 0.112 | 14.7 | 19.41 | 694 | -- | -- |
| 37.08 | 0.284 | 2.96 | 0.0865 | -- | 2.51 | -- | 4.84 | 0.0948 | -- | 17.1 | 586 | -- | -- |
| 41.7 | 0.303 | 2.93 | 0.042 | 0.0671 | -- | 0.346 | -- | 0.0828 | 12.4 | -- | -- | -- | -- |
| 42.19 | 0.304 | 2.93 | 0.056 | 0.07 | -- | -- | -- | 0.0849 | 13.6 | -- | -- | -- | -- |
| 41.19 | 0.299 | 2.93 | 0.136 | -- | 0.431 | -- | -- | 0.115 | -- | 19.52 | 716 | -- | -- |
| 41.45 | 0.3 | 2.93 | -- | 0.0526 | 0.354 | -- | -- | 0.0933 | 14.2 | 18.86 | 684 | -- | -- |
| 42.49 | 0.305 | 2.93 | 0.0531 | -- | -- | -- | -- | 0.0834 | -- | -- | -- | -- | -- |
| 42.27 | 0.304 | 2.93 | -- | 0.069 | -- | -- | -- | 0.0787 | 13.6 | -- | -- | -- | -- |
| 41.61 | 0.3 | 2.93 | -- | -- | 0.367 | -- | -- | 0.0934 | -- | 18.97 | 694 | -- | -- |
| 42.56 | 0.305 | 2.93 | -- | -- | -- | -- | -- | 0.0775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 3 | 37.10 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 1 |
| 35 | 37.10 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 68 | 37.14 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 72 | 37.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 6 |
| 73 | 37.38 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 75 | 37.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 76 | 37.39 | humidity | 90 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 78 | 37.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 6 |
| 79 | 37.41 | humidity | 90 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 80 | 37.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 82 | 37.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 3 |
| 95 | 37.54 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 37.55 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 1 |
| 99 | 37.56 | temperature | 20 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 102 | 37.59 | wind | 1 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 106 | 37.62 | humidity | 90 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 123 | 37.77 | temperature | 20 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 127 | 37.79 | temperature | 20 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 190 | 38.25 | temperature | 20 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 203 | 38.30 | wind | 1 | 270 | < th | dose independent | rect. | 7 | 2 |
| 222 | 38.33 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 226 | 38.36 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 256 | 38.47 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 262 | 38.50 | temperature | 20 | 1440 | < th | dose dependent | sin | 20 | NA |
| 267 | 38.51 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 1 |
| 290 | 38.56 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 5 |
| 291 | 38.56 | temperature | 20 | 720 | < th | dose dependent | rect. | 24 | 3 |
| 318 | 38.60 | temperature | 20 | 720 | < th | dose dependent | sin | 3 | NA |
| 431 | 38.79 | wind | 9 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 445 | 38.81 | wind | 3 | 10 | < th | dose dependent | rect. | 12 | 1 |
| 464 | 38.84 | wind | 3 | 10 | < th | dose dependent | rect. | 10 | 3 |
| 490 | 38.88 | wind | 9 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 492 | 38.88 | wind | 9 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 530 | 38.91 | temperature | 20 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 557 | 38.94 | wind | 9 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 559 | 38.94 | temperature | 20 | 720 | < th | dose dependent | no | NA | NA |
| 579 | 38.96 | temperature | 20 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 584 | 38.97 | temperature | 20 | 720 | > th | dose independent | rect. | 7 | 8 |
| 635 | 39.03 | wind | 5 | 4320 | > th | dose dependent | rect. | 1 | 6 |
| 641 | 39.04 | wind | 9 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 647 | 39.04 | wind | 9 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 661 | 39.05 | wind | 5 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 672 | 39.06 | wind | 9 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 675 | 39.06 | wind | 9 | 4320 | < th | dose independent | rect. | 24 | 5 |
| 706 | 39.07 | wind | 5 | 4320 | > th | dose independent | rect. | 2 | 3 |
| 707 | 39.07 | wind | 5 | 4320 | < th | dose independent | rect. | 2 | 3 |
| 709 | 39.07 | wind | 9 | 4320 | > th | dose independent | rect. | 22 | 7 |
| 725 | 39.07 | wind | 7 | 4320 | > th | dose dependent | rect. | 22 | 7 |
| 782 | 39.08 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 916 | 39.10 | wind | 1 | 720 | > th | dose independent | rect. | 6 | 3 |