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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0280200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xet3 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0375) R2 : 0.256
β1 : -0.933 (0.139) R2dD : 0.0845 R2D : 0.105
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.2 (0.134) R2dE : 0.142 R2E : 0.175
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.101 (0.0812) R2dN8 : 0.00273 R2N8 : 0.003
σ : 0.7
deviance : 225.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.3
memory length : 247
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 10.1
open length of G : 0.62

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
209.16 0.68 3.17 -0.827 0.356 1.15 0.554 -1.75 -0.0838 6.01 24.29 264 10 0.949
218.64 0.689 3.18 -0.931 0.361 1.22 0.94 -- -0.102 5.41 24.5 267 10 0.95
209.9 0.675 3.17 -0.819 0.36 1.15 -- -1.78 -0.0855 6.17 24.28 265 10 0.937
220.08 0.691 3.19 -0.94 0.354 1.25 -- -- -0.112 5.83 24.45 262 10.2 0.783
215.78 0.684 3.18 -0.81 -- 1.11 -- -1.73 -0.0784 -- 24.28 245 10.1 0.665
251.43 0.743 3.22 -1.12 0.395 -- -1.09 -- -0.243 10.6 -- -- -- --
254.68 0.747 3.22 -1.17 0.448 -- -- -- -0.25 9.01 -- -- -- --
225.82 0.7 3.18 -0.933 -- 1.2 -- -- -0.101 -- 24.3 247 10.1 0.62
243.81 0.727 3.17 -- 0.345 1.39 -- -- 0.00265 5.93 24.23 269 10 0.7
266.19 0.762 3.23 -1.17 -- -- -- -- -0.248 -- -- -- -- --
291.02 0.798 3.19 -- 0.447 -- -- -- -0.12 9.21 -- -- -- --
249.89 0.736 3.18 -- -- 1.35 -- -- -0.0062 -- 24.4 320 10.1 0.617
302.6 0.812 3.2 -- -- -- -- -- -0.117 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 213.23 temperature 25.0 270 < th dose independent rect. 10 1
2 215.44 temperature 30.0 270 < th dose dependent rect. 10 1
13 220.02 temperature 30.0 10 < th dose independent rect. 11 3
20 220.60 temperature 10.0 720 > th dose dependent rect. 5 5
23 221.22 wind 3.0 270 > th dose independent rect. 10 1
25 221.27 temperature 25.0 720 < th dose independent rect. 22 2
32 221.59 wind 3.0 30 > th dose independent rect. 11 3
41 222.20 temperature 20.0 720 < th dose dependent rect. 3 2
57 223.24 wind 3.0 720 > th dose independent rect. 7 5
60 223.29 temperature 30.0 90 < th dose dependent rect. 10 11
67 223.81 temperature 30.0 720 < th dose dependent rect. 2 10
73 224.01 wind 1.0 270 > th dose dependent rect. 10 1
79 224.12 temperature 30.0 270 < th dose dependent rect. 8 11
84 224.41 wind 1.0 30 > th dose dependent rect. 11 3
85 224.42 temperature 20.0 720 < th dose independent rect. 2 3
94 224.78 temperature 20.0 720 < th dose independent rect. 3 1
95 224.82 temperature 30.0 270 < th dose dependent rect. 8 9
99 224.86 temperature 20.0 720 < th dose independent rect. 1 11
130 225.30 temperature 20.0 720 > th dose independent rect. 5 2
135 225.31 temperature 10.0 270 > th dose dependent rect. 5 16
137 225.34 temperature 15.0 90 > th dose dependent rect. 5 18
138 225.35 temperature 20.0 720 > th dose independent rect. 5 5
144 225.43 radiation 20.0 14400 < th dose independent rect. 3 3
151 225.51 atmosphere 995.0 4320 > th dose independent rect. 3 3
152 225.51 temperature 10.0 1440 > th dose independent rect. 6 6
155 225.51 atmosphere 995.0 1440 > th dose independent rect. 6 6
156 225.51 temperature 10.0 1440 > th dose independent rect. 12 18
161 225.58 temperature 20.0 720 < th dose independent rect. 2 5
170 225.68 temperature 30.0 10 < th dose independent rect. 11 19
173 225.71 temperature 30.0 720 < th dose dependent rect. 2 1
177 225.73 atmosphere 1015.0 90 < th dose dependent rect. 5 5
180 225.78 temperature 20.0 720 > th dose independent rect. 3 14
182 225.81 wind 1.0 30 > th dose independent rect. 14 21
192 225.91 temperature 10.0 720 > th dose dependent rect. 5 10
206 226.03 temperature 30.0 720 < th dose dependent rect. 2 3
213 226.11 temperature 10.0 720 > th dose dependent rect. 4 12
242 226.48 temperature 15.0 10 > th dose dependent rect. 6 18
252 226.61 radiation 40.0 1440 < th dose independent rect. 16 14
267 226.71 wind 3.0 720 > th dose independent rect. 8 1
271 226.75 radiation 40.0 1440 < th dose independent rect. 16 9
319 227.15 radiation 20.0 14400 < th dose independent rect. 1 5
341 227.30 temperature 30.0 90 < th dose independent rect. 10 19
375 227.54 wind 3.0 90 > th dose independent rect. 10 11
380 227.57 wind 9.0 30 < th dose independent rect. 14 21
385 227.59 radiation 30.0 4320 > th dose dependent rect. 7 1
415 227.68 radiation 40.0 1440 < th dose independent rect. 16 11
421 227.70 wind 9.0 720 < th dose dependent rect. 5 5
434 227.77 temperature 20.0 720 < th dose independent sin 5 NA
438 227.79 atmosphere 1000.0 30 > th dose independent rect. 11 3
443 227.84 temperature 10.0 1440 > th dose independent rect. 12 3
447 227.84 temperature 10.0 1440 > th dose independent rect. 15 21
469 228.01 wind 3.0 30 > th dose independent rect. 11 1
470 228.01 temperature 10.0 90 > th dose dependent rect. 5 21
472 228.03 temperature 10.0 30 > th dose independent rect. 11 3
475 228.03 atmosphere 1015.0 30 < th dose independent rect. 11 3
476 228.03 precipitation 0.1 30 < th dose independent rect. 11 3
477 228.03 temperature 10.0 30 > th dose independent rect. 14 21
478 228.03 precipitation 0.1 30 < th dose dependent rect. 11 3
484 228.05 atmosphere 995.0 30 > th dose independent rect. 14 21
492 228.09 temperature 30.0 10 < th dose independent rect. 11 11
507 228.14 precipitation 0.1 30 < th dose independent rect. 14 21
508 228.14 precipitation 0.1 30 < th dose dependent rect. 14 21
524 228.23 humidity 50.0 30 > th dose independent rect. 11 3
526 228.24 temperature 30.0 720 < th dose dependent sin 4 NA
554 228.41 radiation 20.0 14400 < th dose independent rect. 21 9
570 228.45 radiation 20.0 14400 < th dose independent rect. 18 12
597 228.62 atmosphere 995.0 4320 > th dose independent rect. 1 5
600 228.65 atmosphere 1015.0 270 < th dose dependent rect. 5 2
607 228.67 wind 3.0 270 < th dose independent rect. 5 4
629 228.84 radiation 1.0 10 > th dose independent rect. 11 3
647 228.91 wind 3.0 90 > th dose independent rect. 10 13
652 228.95 radiation 30.0 4320 < th dose independent rect. 6 2
658 228.98 temperature 30.0 90 < th dose independent rect. 10 11
674 229.06 wind 9.0 30 < th dose independent rect. 11 3
680 229.07 radiation 20.0 720 < th dose independent rect. 22 9
682 229.07 humidity 50.0 30 > th dose independent rect. 14 21
683 229.08 temperature 10.0 720 > th dose independent rect. 14 10
685 229.08 temperature 10.0 720 > th dose independent rect. 24 14
686 229.08 atmosphere 995.0 720 > th dose independent rect. 24 14
707 229.20 temperature 25.0 720 > th dose dependent rect. 21 3
708 229.20 atmosphere 1015.0 10 < th dose dependent rect. 14 21
726 229.32 temperature 20.0 10 > th dose independent rect. 6 5
727 229.32 temperature 15.0 10 > th dose dependent rect. 6 14
735 229.36 wind 9.0 270 < th dose dependent rect. 5 12
738 229.39 wind 7.0 4320 > th dose independent rect. 15 1
740 229.39 temperature 30.0 10 < th dose independent rect. 24 14
746 229.41 wind 7.0 4320 < th dose independent rect. 15 1
748 229.41 temperature 10.0 720 > th dose independent rect. 2 10
749 229.41 atmosphere 995.0 720 > th dose independent rect. 2 10
750 229.41 temperature 10.0 720 > th dose independent rect. 12 14
760 229.44 wind 3.0 720 > th dose dependent rect. 8 1
773 229.47 atmosphere 1015.0 10 < th dose dependent rect. 22 13
774 229.48 temperature 20.0 720 > th dose independent sin 3 NA
780 229.51 atmosphere 995.0 30 > th dose dependent rect. 24 14
808 229.63 temperature 30.0 90 < th dose independent rect. 21 13
837 229.72 wind 3.0 270 < th dose independent rect. 5 10
869 229.83 wind 3.0 270 > th dose independent rect. 7 12
881 229.87 wind 1.0 10 > th dose independent rect. 12 23
890 229.90 temperature 30.0 30 < th dose independent rect. 14 21
903 229.93 wind 1.0 720 > th dose independent rect. 10 9
907 229.94 humidity 80.0 270 > th dose dependent rect. 5 2
909 229.95 temperature 30.0 10 < th dose independent rect. 22 13
913 229.97 temperature 10.0 720 > th dose dependent sin 4 NA
934 230.05 wind 3.0 270 > th dose independent sin 1 NA
944 230.10 temperature 10.0 90 > th dose independent rect. 10 11
945 230.10 atmosphere 1015.0 90 < th dose independent rect. 10 11
946 230.10 temperature 10.0 90 > th dose independent rect. 21 13
947 230.10 humidity 50.0 90 > th dose independent rect. 21 13
948 230.10 atmosphere 995.0 90 > th dose independent rect. 21 13
954 230.11 humidity 60.0 14400 > th dose independent rect. 20 10
955 230.12 wind 7.0 270 < th dose independent rect. 5 12
956 230.12 wind 9.0 90 < th dose independent rect. 21 13
962 230.15 precipitation 0.1 10 < th dose independent rect. 11 11
963 230.15 precipitation 0.1 10 < th dose dependent rect. 11 11
964 230.15 wind 3.0 30 < th dose dependent rect. 3 15
969 230.16 temperature 10.0 10 > th dose independent rect. 11 11
971 230.16 atmosphere 1015.0 10 < th dose independent rect. 11 11
972 230.16 temperature 10.0 10 > th dose independent rect. 22 13
973 230.16 humidity 50.0 10 > th dose independent rect. 22 13
974 230.16 atmosphere 995.0 10 > th dose independent rect. 22 13
978 230.18 wind 9.0 10 < th dose independent rect. 22 13
979 230.18 humidity 50.0 720 > th dose dependent rect. 22 2
988 230.23 radiation 30.0 4320 > th dose independent rect. 16 16
996 230.25 wind 3.0 30 < th dose dependent rect. 3 10