Os02g0280000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0280000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.2 | 0.444 | 6.71 | 2.19 | 0.397 | -1.14 | 0.714 | 2.41 | 0.0464 | 13.6 | 23.55 | 965 | -- | -- |
| 91.73 | 0.446 | 6.78 | 1.68 | 0.42 | -0.872 | 0.242 | -- | -0.122 | 12.4 | 23.85 | 1057 | -- | -- |
| 90.44 | 0.443 | 6.72 | 2.1 | 0.41 | -1.07 | -- | 1.96 | 0.00253 | 12.4 | 24.08 | 1064 | -- | -- |
| 92.04 | 0.447 | 6.78 | 1.66 | 0.42 | -0.875 | -- | -- | -0.105 | 12.3 | 23.65 | 1057 | -- | -- |
| 99.31 | 0.464 | 6.71 | 2.3 | -- | -1.32 | -- | 2.58 | 0.0606 | -- | 24.1 | 1029 | -- | -- |
| 112.8 | 0.498 | 6.8 | 1.38 | 0.629 | -- | 0.444 | -- | -0.242 | 12.3 | -- | -- | -- | -- |
| 113.61 | 0.499 | 6.8 | 1.4 | 0.628 | -- | -- | -- | -0.24 | 12.1 | -- | -- | -- | -- |
| 101.84 | 0.47 | 6.78 | 1.69 | -- | -1.08 | -- | -- | -0.0967 | -- | 23.9 | 1012 | -- | -- |
| 157.13 | 0.584 | 6.86 | -- | 0.504 | -0.455 | -- | -- | -0.442 | 12.3 | 28.3 | 1094 | -- | -- |
| 138.44 | 0.55 | 6.82 | 1.38 | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
| 164.92 | 0.601 | 6.84 | -- | 0.61 | -- | -- | -- | -0.396 | 12 | -- | -- | -- | -- |
| 171.67 | 0.61 | 6.84 | -- | -- | -0.711 | -- | -- | -0.346 | -- | 24.6 | 990 | -- | -- |
| 188.33 | 0.641 | 6.85 | -- | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 3 | 83.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 19 | 84.85 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 4 |
| 44 | 85.91 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 63 | 86.91 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 74 | 87.20 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 75 | 87.24 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 5 |
| 89 | 87.38 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 108 | 87.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 117 | 88.00 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 7 |
| 237 | 89.26 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 274 | 89.51 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 319 | 89.90 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 18 |
| 337 | 89.99 | temperature | 30 | 720 | < th | dose dependent | sin | 16 | NA |
| 338 | 90.00 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 349 | 90.07 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 13 |
| 350 | 90.08 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 8 |
| 376 | 90.28 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 6 |
| 389 | 90.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 405 | 90.44 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 410 | 90.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 414 | 90.53 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 445 | 90.66 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 541 | 91.04 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 550 | 91.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 18 |
| 594 | 91.26 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 14 |
| 601 | 91.27 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 607 | 91.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 630 | 91.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 640 | 91.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 12 | 19 |
| 643 | 91.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 770 | 91.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 8 | 23 |
| 797 | 91.89 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 828 | 91.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 833 | 91.97 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 835 | 91.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 898 | 92.16 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 21 |
| 918 | 92.20 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 21 |
| 930 | 92.21 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 931 | 92.22 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 19 |
| 933 | 92.22 | temperature | 25 | 30 | < th | dose dependent | no | NA | NA |
| 935 | 92.22 | temperature | 25 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 942 | 92.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 943 | 92.23 | temperature | 25 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 953 | 92.26 | temperature | 25 | 30 | < th | dose dependent | rect. | 19 | 23 |