Os02g0278700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Kaurene synthase A (Fragment).
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Os02g0278700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Kaurene synthase A (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 331.69 | 0.856 | 7.8 | -8.09 | 0.903 | 3.59 | -1.71 | -2.67 | -1.39 | 11 | 19.47 | 1988 | -- | -- |
| 333.6 | 0.851 | 7.73 | -7.5 | 0.942 | 3.87 | -1.54 | -- | -1.26 | 11.2 | 16.83 | 2035 | -- | -- |
| 342.31 | 0.862 | 7.79 | -8 | 0.816 | 3.74 | -- | -1.89 | -1.38 | 11.4 | 18 | 1899 | -- | -- |
| 343.01 | 0.863 | 7.72 | -7.56 | 0.979 | 3.91 | -- | -- | -1.22 | 11.6 | 16.59 | 2074 | -- | -- |
| 372.36 | 0.899 | 7.79 | -7.94 | -- | 3.73 | -- | -1.8 | -1.33 | -- | 17.57 | 1661 | -- | -- |
| 646.09 | 1.19 | 7.54 | -6.08 | 0.616 | -- | -1.55 | -- | -0.411 | 11.9 | -- | -- | -- | -- |
| 655.24 | 1.2 | 7.55 | -6.14 | 0.642 | -- | -- | -- | -0.414 | 12.9 | -- | -- | -- | -- |
| 375.3 | 0.902 | 7.74 | -7.5 | -- | 3.95 | -- | -- | -1.21 | -- | 16.41 | 1671 | -- | -- |
| 1589.54 | 1.86 | 7.44 | -- | 0.853 | 1.75 | -- | -- | 0.00585 | 10 | 21.27 | 472 | -- | -- |
| 680.97 | 1.22 | 7.56 | -6.16 | -- | -- | -- | -- | -0.426 | -- | -- | -- | -- | -- |
| 1647.51 | 1.9 | 7.39 | -- | 0.744 | -- | -- | -- | 0.27 | 13.2 | -- | -- | -- | -- |
| 1617.32 | 1.88 | 7.46 | -- | -- | 1.64 | -- | -- | 0.0291 | -- | 20 | 59 | -- | -- |
| 1681.75 | 1.91 | 7.4 | -- | -- | -- | -- | -- | 0.258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 319.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 2 | 320.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 12 | 326.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 40 | 327.68 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 14 |
| 42 | 327.80 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 43 | 327.84 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 9 |
| 52 | 328.16 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 87 | 328.69 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 117 | 329.24 | temperature | 15 | 4320 | > th | dose dependent | rect. | 1 | 3 |
| 140 | 329.48 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 210 | 330.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 229 | 330.43 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 233 | 330.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 256 | 330.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 257 | 330.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 259 | 330.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 313 | 331.04 | radiation | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 359 | 331.33 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 1 |
| 399 | 331.54 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 3 |
| 403 | 331.57 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 417 | 331.69 | temperature | 15 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 449 | 331.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 16 | 12 |
| 478 | 332.06 | radiation | 1 | 43200 | < th | dose independent | sin | 16 | NA |
| 532 | 332.48 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 20 |
| 538 | 332.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 15 |
| 570 | 332.66 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 589 | 332.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 621 | 332.79 | radiation | 1 | 43200 | < th | dose dependent | sin | 16 | NA |
| 648 | 332.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 649 | 332.98 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 716 | 333.26 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 18 |
| 830 | 333.77 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 840 | 333.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 12 |