Os02g0277700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, plant specific containing protein.
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Os02g0277700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, plant specific containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.39 | 0.588 | 8.89 | 5.49 | 0.913 | -3.45 | 0.0633 | -8.34 | 1.82 | 23.6 | 0.17 | 4330 | 17.8 | 12 |
| 283.58 | 0.784 | 8.89 | 5.4 | 0.925 | -2.97 | 0.292 | -- | 1.88 | 23.6 | 2.76 | 5762 | 17.9 | 12 |
| 156.01 | 0.582 | 8.89 | 5.52 | 0.956 | -3.44 | -- | -8.36 | 1.83 | 23.6 | 0.17 | 4333 | 17.8 | 11.9 |
| 238.19 | 0.719 | 8.89 | 3.69 | 1.15 | -2.58 | -- | -- | 1.89 | 23.3 | 1.398 | 5777 | 17.9 | 12.2 |
| 182.99 | 0.63 | 8.89 | 5.54 | -- | -3.52 | -- | -8.3 | 1.92 | -- | 0.1684 | 4287 | 17.8 | 11.8 |
| 482.21 | 1.03 | 8.84 | 3.24 | 0.958 | -- | 0.224 | -- | 1.92 | 0.125 | -- | -- | -- | -- |
| 482.42 | 1.03 | 8.84 | 3.23 | 0.957 | -- | -- | -- | 1.92 | 0.0981 | -- | -- | -- | -- |
| 256.24 | 0.746 | 8.9 | 3.71 | -- | -2.52 | -- | -- | 1.71 | -- | 1.349 | 5705 | 17.9 | 12.2 |
| 299.04 | 0.805 | 8.8 | -- | 0.925 | -3.26 | -- | -- | 1.88 | 23.3 | 0.01006 | 47520 | 18.6 | 12.8 |
| 540.1 | 1.09 | 8.82 | 3.26 | -- | -- | -- | -- | 1.93 | -- | -- | -- | -- | -- |
| 757.01 | 1.29 | 8.92 | -- | 1 | -- | -- | -- | 1.56 | 0.277 | -- | -- | -- | -- |
| 194.07 | 0.649 | 8.94 | -- | -- | -3.88 | -- | -- | 0.569 | -- | 1.827 | 37337 | 17.8 | 15.4 |
| 820.12 | 1.34 | 8.9 | -- | -- | -- | -- | -- | 1.57 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 143.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 2 | 144.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 7 | 144.83 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 14 | 145.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 15 | 145.37 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 18 | 145.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 38 | 147.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 61 | 148.59 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 11 |
| 66 | 148.95 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 67 | 149.13 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 79 | 149.22 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 84 | 149.32 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 4 |
| 87 | 149.50 | radiation | 1 | 43200 | < th | dose dependent | sin | 13 | NA |
| 105 | 149.84 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 16 |
| 150 | 150.30 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 183 | 150.47 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 14 | NA |
| 225 | 150.80 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 226 | 150.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 227 | 150.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 10 |
| 241 | 150.89 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 271 | 151.04 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 16 |
| 328 | 151.34 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 347 | 151.41 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 354 | 151.45 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 6 |
| 420 | 151.63 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 422 | 151.64 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 423 | 151.64 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 425 | 151.64 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 474 | 151.78 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 22 | 23 |
| 485 | 151.81 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 491 | 151.89 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 500 | 151.93 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 512 | 151.97 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 522 | 152.00 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 523 | 152.00 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 542 | 152.12 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 590 | 152.30 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 7 | 5 |
| 607 | 152.36 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 623 | 152.43 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 640 | 152.50 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 648 | 152.53 | atmosphere | 1010 | 43200 | < th | dose independent | sin | 7 | NA |
| 655 | 152.55 | radiation | 1 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 668 | 152.60 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 675 | 152.62 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 684 | 152.65 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 703 | 152.73 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 751 | 152.87 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 792 | 153.02 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 810 | 153.08 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 824 | 153.12 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 15 | 21 |
| 825 | 153.13 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 828 | 153.14 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 9 | 3 |
| 850 | 153.22 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 19 | 17 |
| 854 | 153.23 | atmosphere | 1010 | 43200 | > th | dose independent | sin | 5 | NA |
| 855 | 153.23 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 878 | 153.28 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 888 | 153.31 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 2 | 14 |
| 894 | 153.32 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 23 |
| 938 | 153.44 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 941 | 153.45 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 960 | 153.50 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 962 | 153.51 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 995 | 153.59 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 3 | 21 |
| 998 | 153.59 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 6 |