Os02g0275300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0275300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 201.34 | 0.667 | 3.99 | -0.426 | 1.3 | 1.21 | 0.832 | 1.6 | -0.255 | 21.9 | 59 | 1237 | -- | -- |
| 205.02 | 0.667 | 3.98 | -0.246 | 1.31 | 1.29 | 0.658 | -- | -0.246 | 21.9 | 55.31 | 1218 | -- | -- |
| 203.77 | 0.665 | 3.99 | -0.43 | 1.26 | 1.2 | -- | 1.35 | -0.252 | 21.9 | 58.67 | 1267 | -- | -- |
| 206.42 | 0.669 | 3.99 | -0.267 | 1.33 | 1.32 | -- | -- | -0.238 | 22 | 55.93 | 1206 | -- | -- |
| 281.04 | 0.781 | 3.95 | -0.416 | -- | 1.12 | -- | 1.11 | -0.242 | -- | 58.82 | 1476 | -- | -- |
| 239.49 | 0.726 | 4 | -0.302 | 1.15 | -- | 0.611 | -- | -0.304 | 21.2 | -- | -- | -- | -- |
| 240.78 | 0.727 | 4 | -0.325 | 1.14 | -- | -- | -- | -0.305 | 21.3 | -- | -- | -- | -- |
| 282.73 | 0.783 | 3.95 | -0.293 | -- | 1.24 | -- | -- | -0.225 | -- | 59.23 | 1480 | -- | -- |
| 207.79 | 0.671 | 3.99 | -- | 1.22 | 1.25 | -- | -- | -0.234 | 21.9 | 43.04 | 1313 | -- | -- |
| 317.12 | 0.832 | 3.97 | -0.319 | -- | -- | -- | -- | -0.31 | -- | -- | -- | -- | -- |
| 243.56 | 0.73 | 3.99 | -- | 1.14 | -- | -- | -- | -0.269 | 21.3 | -- | -- | -- | -- |
| 284.76 | 0.786 | 3.95 | -- | -- | 1.17 | -- | -- | -0.22 | -- | 45.57 | 1479 | -- | -- |
| 319.81 | 0.835 | 3.96 | -- | -- | -- | -- | -- | -0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 191.12 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 7 | 192.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 17 | 192.86 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 1 | 13 |
| 41 | 193.90 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 52 | 194.25 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 65 | 194.60 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 93 | 195.18 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 97 | 195.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 101 | 195.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 173 | 196.36 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 195 | 196.80 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 5 | NA |
| 332 | 198.24 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 440 | 199.22 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 635 | 200.66 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 758 | 201.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 760 | 201.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 833 | 201.81 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 892 | 202.12 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 928 | 202.31 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 5 |