Os02g0274900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Major facilitator superfamily protein.
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Os02g0274900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Major facilitator superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.65 | 0.328 | 12.5 | -0.697 | 2.27 | -0.858 | 0.325 | -1.13 | -0.391 | 6.33 | 20.5 | 1379 | -- | -- |
| 51.15 | 0.333 | 12.5 | -0.48 | 2.27 | -0.707 | 0.413 | -- | -0.346 | 6.34 | 20.6 | 1368 | -- | -- |
| 48.86 | 0.326 | 12.5 | -0.71 | 2.26 | -0.857 | -- | -1.13 | -0.386 | 6.32 | 20.6 | 1359 | -- | -- |
| 51.32 | 0.334 | 12.5 | -0.491 | 2.27 | -0.701 | -- | -- | -0.347 | 6.32 | 20.62 | 1360 | -- | -- |
| 291.81 | 0.796 | 12.6 | -0.625 | -- | -0.971 | -- | -0.832 | -0.294 | -- | 21.29 | 561 | -- | -- |
| 62.31 | 0.37 | 12.5 | -0.785 | 2.26 | -- | 0.419 | -- | -0.508 | 6.38 | -- | -- | -- | -- |
| 62.75 | 0.371 | 12.5 | -0.78 | 2.26 | -- | -- | -- | -0.51 | 6.37 | -- | -- | -- | -- |
| 181.32 | 0.627 | 12.5 | -0.392 | -- | -1.52 | -- | -- | -0.167 | -- | 26.4 | 410 | -- | -- |
| 56.72 | 0.351 | 12.5 | -- | 2.26 | -0.836 | -- | -- | -0.263 | 6.4 | 20.5 | 1453 | -- | -- |
| 327.92 | 0.846 | 12.6 | -0.721 | -- | -- | -- | -- | -0.462 | -- | -- | -- | -- | -- |
| 78.78 | 0.415 | 12.5 | -- | 2.25 | -- | -- | -- | -0.423 | 6.39 | -- | -- | -- | -- |
| 182.66 | 0.629 | 12.5 | -- | -- | -1.61 | -- | -- | -0.015 | -- | 26.3 | 407 | -- | -- |
| 341.63 | 0.863 | 12.6 | -- | -- | -- | -- | -- | -0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.67 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 6 |
| 4 | 47.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 6 |
| 13 | 48.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 10 |
| 59 | 48.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 64 | 48.38 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 95 | 48.49 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 362 | 49.30 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 401 | 49.38 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 402 | 49.39 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 417 | 49.42 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 440 | 49.51 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 442 | 49.51 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 447 | 49.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 452 | 49.55 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 460 | 49.57 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 481 | 49.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 482 | 49.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 503 | 49.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 509 | 49.79 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 548 | 49.98 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 564 | 50.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 570 | 50.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 6 |
| 575 | 50.12 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 588 | 50.15 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 602 | 50.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 616 | 50.24 | humidity | 50 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 623 | 50.26 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 638 | 50.31 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 656 | 50.37 | wind | 3 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 669 | 50.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 756 | 50.59 | temperature | 25 | 1440 | < th | dose dependent | sin | 11 | NA |
| 770 | 50.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 810 | 50.67 | temperature | 25 | 720 | < th | dose dependent | sin | 0 | NA |
| 855 | 50.74 | wind | 1 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 905 | 50.81 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 949 | 50.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 980 | 50.92 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 10 |