FiT-DB / Search/ Help/ Sample detail
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Os02g0274100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peroxisomal fatty acid beta-oxidation multifunctional protein (MFP) [Includes: Enoyl-CoA hydratase (EC 4.2.1.17); 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8); 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.33 | 0.25 | 11.2 | 0.964 | 0.732 | -0.417 | 0.0419 | -0.451 | 0.45 | 19.1 | 25.12 | 5571 | -- | -- |
| 27.58 | 0.245 | 11.2 | 1.14 | 0.732 | -0.467 | 0.124 | -- | 0.694 | 19.3 | 26.89 | 12856 | -- | -- |
| 27.74 | 0.245 | 11.2 | 1.09 | 0.77 | -0.466 | -- | -0.216 | 0.62 | 19.1 | 24.06 | 18840 | -- | -- |
| 25.99 | 0.237 | 11.2 | 1.19 | 0.746 | -0.647 | -- | -- | 0.728 | 19 | 29 | 19292 | -- | -- |
| 55.79 | 0.348 | 11.2 | 1.37 | -- | -0.555 | -- | 0.131 | 0.662 | -- | 25.08 | 25966 | -- | -- |
| 35.85 | 0.281 | 11.2 | 0.917 | 0.744 | -- | 0.065 | -- | 0.437 | 18.9 | -- | -- | -- | -- |
| 35.86 | 0.28 | 11.2 | 0.916 | 0.744 | -- | -- | -- | 0.438 | 18.9 | -- | -- | -- | -- |
| 54.76 | 0.345 | 11.2 | 1.15 | -- | -0.606 | -- | -- | 0.716 | -- | 29.92 | 18753 | -- | -- |
| 55.91 | 0.348 | 11.3 | -- | 0.722 | -0.206 | -- | -- | 0.393 | 19.1 | 30.2 | 8454 | -- | -- |
| 64.86 | 0.376 | 11.2 | 0.9 | -- | -- | -- | -- | 0.423 | -- | -- | -- | -- | -- |
| 57.98 | 0.356 | 11.3 | -- | 0.733 | -- | -- | -- | 0.336 | 19 | -- | -- | -- | -- |
| 81.72 | 0.421 | 11.3 | -- | -- | -0.325 | -- | -- | 0.294 | -- | 34.4 | 7037 | -- | -- |
| 86.24 | 0.433 | 11.2 | -- | -- | -- | -- | -- | 0.324 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.05 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 2 | 26.05 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 34 | 26.26 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 133 | 26.48 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 262 | 26.68 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 263 | 26.68 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 265 | 26.68 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 268 | 26.69 | temperature | 25.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 269 | 26.69 | temperature | 25.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 278 | 26.70 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 310 | 26.71 | temperature | 25.0 | 43200 | > th | dose dependent | sin | 11 | NA |
| 328 | 26.73 | temperature | 30.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 352 | 26.75 | temperature | 30.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 354 | 26.75 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 437 | 26.78 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 452 | 26.79 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 16 | 20 |
| 465 | 26.80 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 466 | 26.80 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 485 | 26.80 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 494 | 26.81 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 501 | 26.81 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 502 | 26.81 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 528 | 26.81 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 539 | 26.81 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 7 |
| 551 | 26.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 671 | 26.82 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 674 | 26.82 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 720 | 26.83 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 21 | NA |
| 725 | 26.83 | temperature | 30.0 | 43200 | > th | dose dependent | no | NA | NA |
| 928 | 26.84 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 970 | 26.84 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 18 | NA |
