Os02g0274000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0274000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.63 | 0.228 | 11.3 | 0.515 | 0.821 | -0.798 | -0.0126 | 0.302 | 0.376 | 3.53 | 19.9 | 2988 | -- | -- |
| 23.69 | 0.227 | 11.3 | 0.548 | 0.83 | -0.857 | -0.0256 | -- | 0.381 | 3.54 | 19.84 | 3145 | -- | -- |
| 23.63 | 0.226 | 11.3 | 0.515 | 0.821 | -0.799 | -- | 0.3 | 0.376 | 3.53 | 19.9 | 2992 | -- | -- |
| 23.69 | 0.227 | 11.3 | 0.541 | 0.83 | -0.868 | -- | -- | 0.381 | 3.56 | 19.83 | 3147 | -- | -- |
| 59.29 | 0.359 | 11.3 | 0.503 | -- | -0.774 | -- | 0.489 | 0.366 | -- | 20.6 | 2623 | -- | -- |
| 37 | 0.285 | 11.2 | 1.02 | 0.84 | -- | -0.0769 | -- | 0.596 | 3.57 | -- | -- | -- | -- |
| 37.01 | 0.285 | 11.2 | 1.02 | 0.84 | -- | -- | -- | 0.596 | 3.55 | -- | -- | -- | -- |
| 59.59 | 0.36 | 11.3 | 0.569 | -- | -0.902 | -- | -- | 0.394 | -- | 20 | 2632 | -- | -- |
| 25.45 | 0.235 | 11.3 | -- | 0.828 | -1.05 | -- | -- | 0.274 | 3.59 | 17 | 47520 | -- | -- |
| 76.36 | 0.408 | 11.2 | 1.06 | -- | -- | -- | -- | 0.619 | -- | -- | -- | -- | -- |
| 64.65 | 0.376 | 11.2 | -- | 0.86 | -- | -- | -- | 0.482 | 3.55 | -- | -- | -- | -- |
| 62.76 | 0.369 | 11.3 | -- | -- | -1.1 | -- | -- | 0.278 | -- | 18.2 | 24252 | -- | -- |
| 105.95 | 0.48 | 11.2 | -- | -- | -- | -- | -- | 0.501 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.20 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 2 | 22.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 5 | 22.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 12 | 22.85 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 31 | 22.95 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 52 | 23.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 3 |
| 55 | 23.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 3 |
| 63 | 23.08 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 75 | 23.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 84 | 23.15 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 297 | 23.74 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 380 | 23.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 385 | 23.91 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 401 | 23.94 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 426 | 23.97 | humidity | 60 | 43200 | < th | dose dependent | rect. | 20 | 14 |
| 433 | 23.98 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 475 | 24.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 512 | 24.10 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 5 |
| 583 | 24.20 | humidity | 60 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 601 | 24.22 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 613 | 24.24 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 665 | 24.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 680 | 24.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 681 | 24.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 694 | 24.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 808 | 24.46 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 850 | 24.49 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 914 | 24.55 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 920 | 24.55 | temperature | 25 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 959 | 24.58 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 6 |