FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0272300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pollen-specific kinase partner protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.46 (0.0495) R2 : 0.473
β1 : 1.21 (0.18) R2dD : 0.0552 R2D : 0.0249
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.86 (0.184) R2dE : 0.33 R2E : 0.065
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.7 (0.797) R2dD*E : 0.339 R2D*E : 0.135
γ1 : 0.133 (0.108) R2dN8 : 0.00245 R2N8 : -0.0133
σ : 0.904
deviance : 376.98
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 6.699
memory length : 4319
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.3
open length of G : 3.08

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
366.32 0.899 3.46 1.2 0.351 -2.9 1.69 -12.7 0.141 15.3 6.698 4321 18 3.06
487.93 1.03 3.46 1.02 0.278 -2 1.23 -- 0.0806 15.4 8.5 4319 18.3 2.9
369.92 0.896 3.46 1.21 0.353 -2.88 -- -12.7 0.139 15.1 6.699 4320 18.3 3.08
487.98 1.03 3.46 1.05 0.25 -1.97 -- -- 0.109 14.8 8.496 4318 18.3 2.8
376.98 0.904 3.46 1.21 -- -2.86 -- -12.7 0.133 -- 6.699 4319 18.3 3.08
674.51 1.22 3.39 0.883 0.41 -- 1.52 -- -0.0351 14.7 -- -- -- --
682.52 1.22 3.39 0.92 0.413 -- -- -- -0.0264 14.5 -- -- -- --
471.89 1.01 3.46 1.27 -- -3.02 -- -- 0.147 -- 8.497 4319 18.3 2.77
442.49 0.98 3.45 -- 0.302 -3.81 -- -- 0.1 13.7 8.581 4318 18.5 2.61
692.55 1.23 3.39 0.903 -- -- -- -- -0.0366 -- -- -- -- --
704.83 1.24 3.41 -- 0.395 -- -- -- -0.129 14.4 -- -- -- --
445.8 0.983 3.45 -- -- -3.8 -- -- 0.111 -- 8.668 4319 18.4 2.62
714.04 1.25 3.41 -- -- -- -- -- -0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 381.07 wind 7 4320 < th dose independent rect. 18 3
2 382.22 wind 7 4320 < th dose independent rect. 18 5
5 389.62 wind 7 4320 > th dose independent rect. 18 3
11 393.95 wind 5 4320 > th dose dependent rect. 18 4
144 422.07 atmosphere 995 14400 < th dose independent rect. 15 4
147 422.10 atmosphere 995 14400 > th dose independent rect. 15 5
152 422.65 atmosphere 995 14400 > th dose independent rect. 7 13
153 422.71 humidity 90 1440 < th dose dependent rect. 3 1
158 422.85 atmosphere 995 14400 > th dose independent rect. 11 9
219 423.55 humidity 80 1440 < th dose independent rect. 22 1
226 423.71 atmosphere 995 14400 < th dose dependent rect. 15 4
236 424.29 atmosphere 995 14400 < th dose dependent rect. 16 1
420 434.69 humidity 90 1440 < th dose dependent rect. 23 8
447 436.66 humidity 90 1440 < th dose dependent rect. 2 5
459 437.55 atmosphere 995 14400 > th dose independent rect. 20 20
464 438.15 radiation 1 14400 < th dose dependent rect. 23 3
501 440.33 radiation 1 14400 < th dose dependent rect. 20 6
510 440.93 atmosphere 995 14400 > th dose independent sin 22 NA
525 441.63 atmosphere 995 14400 < th dose independent sin 22 NA
526 441.68 atmosphere 995 14400 > th dose independent sin 4 NA
538 442.08 atmosphere 995 14400 < th dose dependent sin 23 NA
581 443.73 atmosphere 995 14400 < th dose independent sin 3 NA
822 448.83 atmosphere 995 14400 > th dose independent no NA NA
826 448.83 atmosphere 995 14400 > th dose independent rect. 12 23
827 448.83 atmosphere 995 14400 > th dose independent rect. 14 23
829 448.84 atmosphere 995 14400 > th dose independent rect. 10 23
933 450.20 atmosphere 995 14400 > th dose independent rect. 14 21
992 450.80 atmosphere 995 14400 < th dose independent no NA NA