Os02g0268600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Expansin/Lol pI family protein.
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Os02g0268600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Expansin/Lol pI family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 326.29 | 0.849 | 2.84 | 1.49 | 0.185 | -2.27 | 0.149 | 26.7 | -0.179 | 5.96 | 29.8 | 243 | -- | -- |
| 332.25 | 0.855 | 3.02 | 0.0267 | 0.159 | 0.934 | -0.421 | -- | -0.204 | 3.54 | 29.8 | 243 | -- | -- |
| 326.31 | 0.841 | 2.84 | 1.5 | 0.184 | -2.31 | -- | 27 | -0.182 | 5.51 | 29.8 | 239 | -- | -- |
| 332.73 | 0.855 | 3.01 | 0.0275 | 0.177 | 0.948 | -- | -- | -0.207 | 4.05 | 29.44 | 54 | -- | -- |
| 327.81 | 0.843 | 2.84 | 1.53 | -- | -2.47 | -- | 27.2 | -0.184 | -- | 29.78 | 239 | -- | -- |
| 339.85 | 0.864 | 3.02 | 0.073 | 0.0344 | -- | -0.614 | -- | -0.236 | 2.79 | -- | -- | -- | -- |
| 341.06 | 0.865 | 3.02 | 0.0874 | 0.0535 | -- | -- | -- | -0.233 | 5.96 | -- | -- | -- | -- |
| 332.3 | 0.853 | 3.02 | 0.0733 | -- | 2.99 | -- | -- | -0.225 | -- | 34.9 | 191 | -- | -- |
| 332.47 | 0.849 | 3.01 | -- | 0.195 | 0.935 | -- | -- | -0.202 | 4.42 | 29.3 | 44 | -- | -- |
| 341.21 | 0.863 | 3.02 | 0.089 | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
| 341.26 | 0.864 | 3.02 | -- | 0.0548 | -- | -- | -- | -0.243 | 5.88 | -- | -- | -- | -- |
| 331.28 | 0.848 | 3.02 | -- | -- | 2.73 | -- | -- | -0.224 | -- | 35.19 | 183 | -- | -- |
| 341.42 | 0.862 | 3.02 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 312.24 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 2 |
| 2 | 312.34 | humidity | 90.0 | 30 | < th | dose independent | rect. | 3 | 2 |
| 23 | 314.18 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 33 | 314.22 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 38 | 315.09 | wind | 7.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 40 | 316.10 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 3 |
| 62 | 317.94 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 16 | 1 |
| 66 | 318.94 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 70 | 320.04 | radiation | 1.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 81 | 321.07 | atmosphere | 1000.0 | 270 | < th | dose independent | rect. | 10 | 7 |
| 91 | 322.20 | wind | 5.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 97 | 322.61 | precipitation | 0.1 | 90 | > th | dose independent | rect. | 16 | 3 |
| 98 | 322.64 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 109 | 322.89 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 1 |
| 138 | 322.89 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 1 |
| 206 | 323.23 | radiation | 30.0 | 10 | > th | dose independent | rect. | 13 | 1 |
| 217 | 323.58 | humidity | 50.0 | 270 | < th | dose independent | rect. | 12 | 2 |
| 230 | 323.86 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 13 | 4 |
| 235 | 324.07 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 238 | 324.10 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 7 |
| 257 | 324.35 | atmosphere | 1000.0 | 270 | < th | dose dependent | rect. | 11 | 2 |
| 258 | 324.36 | temperature | 30.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 261 | 324.42 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 17 | 4 |
| 263 | 324.45 | atmosphere | 1000.0 | 10 | < th | dose independent | rect. | 17 | 3 |
| 267 | 324.45 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 4 |
| 297 | 324.50 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 10 |
| 315 | 324.54 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 7 |
| 326 | 324.57 | humidity | 50.0 | 270 | < th | dose dependent | rect. | 13 | 2 |
| 365 | 324.62 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 12 | 8 |
| 372 | 324.66 | wind | 9.0 | 270 | > th | dose dependent | rect. | 16 | 3 |
| 394 | 324.91 | precipitation | 0.1 | 90 | > th | dose dependent | sin | 20 | NA |
| 395 | 324.92 | wind | 9.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 398 | 324.95 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 442 | 325.49 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 446 | 325.53 | temperature | 30.0 | 270 | < th | dose independent | rect. | 10 | 11 |
| 468 | 325.61 | wind | 9.0 | 270 | > th | dose dependent | rect. | 12 | 14 |
| 537 | 325.64 | wind | 9.0 | 270 | > th | dose dependent | rect. | 12 | 11 |
| 541 | 325.65 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 17 | 7 |
| 561 | 325.65 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 17 | 7 |
| 644 | 325.72 | wind | 9.0 | 270 | > th | dose dependent | rect. | 12 | 7 |
| 689 | 325.84 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 16 | 9 |
| 710 | 325.96 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 719 | 325.96 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 16 | 3 |
| 740 | 326.02 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 7 |
| 743 | 326.03 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 16 | 2 |
| 745 | 326.05 | wind | 9.0 | 270 | > th | dose independent | sin | 14 | NA |
| 748 | 326.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 13 |
| 751 | 326.07 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 764 | 326.10 | precipitation | 0.1 | 90 | > th | dose dependent | rect. | 6 | 19 |
| 778 | 326.14 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 4 |
| 790 | 326.18 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 13 | 1 |
| 794 | 326.22 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 1 |
| 801 | 326.27 | wind | 9.0 | 270 | > th | dose independent | rect. | 12 | 14 |
| 829 | 326.31 | wind | 9.0 | 270 | > th | dose independent | rect. | 12 | 11 |
| 882 | 326.45 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 939 | 326.64 | wind | 9.0 | 270 | < th | dose independent | sin | 12 | NA |
| 960 | 326.73 | temperature | 30.0 | 10 | > th | dose dependent | rect. | 12 | 22 |
| 962 | 326.74 | temperature | 30.0 | 270 | > th | dose independent | sin | 2 | NA |
| 992 | 326.78 | temperature | 30.0 | 270 | > th | dose dependent | no | NA | NA |