FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0267200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Alpha-expansin OsEXPA13.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : -54.6 (4.48) R2 : 0.288
β1 : 200 (15.6) R2dD : 9280 R2D : -22300
β2 : -- (--) R2dC : -- R2C : --
β3 : -26300 (2050) R2dE : 5880000 R2E : -5890000
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 91600 (7140) R2dD*E : 5880000 R2D*E : -5860000
γ1 : 0.152 (0.0487) R2dN8 : 0.0204 R2N8 : -13000
σ : 0.426
deviance : 83.8
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 90
memory length : 90
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 9
open length of G : 1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
83.43 0.425 -54.6 200 0.0359 -26300 -0.258 91600 0.151 0.443 90 90 9 1
113.42 0.5 2.96 -0.233 0.0151 0.0999 0.441 -- 0.142 10.5 90 90 9 1
83.71 0.426 -54.6 200 0.0377 -26300 -- 91600 0.151 1.01 90 91 9 1
108.91 0.486 2.96 -0.205 0.00948 0.726 -- -- 0.132 21.6 83.3 214 7.82 0.817
83.8 0.426 -54.6 200 -- -26300 -- 91600 0.152 -- 90 90 9 1
113.43 0.499 2.96 -0.232 0.016 -- 0.445 -- 0.142 10.5 -- -- -- --
114.18 0.5 2.96 -0.215 0.0348 -- -- -- 0.143 6.26 -- -- -- --
105.16 0.478 2.94 -0.245 -- 1.57 -- -- 0.117 -- 87.52 111 8.16 0.0143
102.73 0.472 2.97 -- 0.00744 2.65 -- -- 0.186 13.5 91.05 170 7.97 0.419
114.25 0.499 2.96 -0.214 -- -- -- -- 0.143 -- -- -- -- --
115.41 0.503 2.96 -- 0.032 -- -- -- 0.167 6.62 -- -- -- --
99.97 0.466 2.95 -- -- 2.79 -- -- 0.183 -- 93.06 201 8.08 0.0765
115.46 0.502 2.96 -- -- -- -- -- 0.167 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.43 humidity 90.0 90 > th dose independent rect. 9 1
2 83.43 humidity 90.0 90 > th dose dependent rect. 9 1
5 102.38 humidity 80.0 30 > th dose independent rect. 2 1
6 102.39 humidity 80.0 30 > th dose dependent rect. 2 1
7 102.41 temperature 20.0 30 > th dose dependent rect. 2 1
9 102.43 wind 3.0 30 < th dose dependent rect. 2 1
10 102.45 temperature 20.0 30 > th dose independent rect. 2 1
11 102.54 wind 1.0 30 < th dose independent rect. 2 1
17 102.77 atmosphere 1005.0 30 > th dose dependent rect. 2 1
24 102.99 wind 5.0 30 < th dose independent rect. 2 1
28 103.05 temperature 10.0 30 > th dose independent rect. 2 1
30 103.05 temperature 30.0 30 < th dose independent rect. 2 1
31 103.05 humidity 50.0 30 > th dose independent rect. 2 1
35 103.05 atmosphere 995.0 30 > th dose independent rect. 2 1
36 103.05 atmosphere 1010.0 30 < th dose independent rect. 2 1
38 103.05 radiation 1.0 30 < th dose independent rect. 2 1
43 103.05 precipitation 0.1 30 < th dose independent rect. 2 1
44 103.05 temperature 10.0 30 > th dose independent rect. 3 23
45 103.05 radiation 1.0 30 < th dose dependent rect. 2 1
50 103.05 precipitation 0.1 30 < th dose dependent rect. 2 1
53 103.09 humidity 80.0 10 > th dose independent rect. 9 1
63 103.41 atmosphere 1015.0 30 < th dose dependent rect. 2 1
72 103.95 temperature 30.0 30 < th dose dependent rect. 2 1
78 104.32 wind 9.0 30 < th dose independent rect. 3 23
86 104.73 wind 1.0 30 > th dose independent rect. 2 1
126 105.59 wind 9.0 720 < th dose independent rect. 8 16
136 105.79 humidity 90.0 90 < th dose dependent rect. 1 1
139 105.84 humidity 90.0 10 < th dose dependent rect. 2 1
151 106.04 wind 9.0 720 < th dose independent rect. 12 8
152 106.20 humidity 90.0 90 < th dose independent rect. 1 1
159 106.38 wind 9.0 720 < th dose independent rect. 1 23
160 106.41 atmosphere 995.0 30 > th dose independent rect. 3 23
176 106.74 wind 7.0 720 < th dose independent rect. 3 12
179 106.80 wind 9.0 270 < th dose independent sin 11 NA
181 106.80 wind 7.0 720 < th dose independent rect. 19 20
186 106.83 wind 9.0 720 < th dose independent rect. 17 23
190 106.85 wind 9.0 270 > th dose independent sin 11 NA
196 106.91 radiation 20.0 90 < th dose independent rect. 8 1
208 107.02 wind 9.0 720 < th dose independent rect. 12 17
252 107.15 wind 9.0 270 > th dose dependent sin 10 NA
256 107.18 wind 9.0 270 > th dose dependent rect. 16 20
260 107.24 wind 9.0 720 > th dose independent rect. 22 19
262 107.24 wind 7.0 270 > th dose dependent rect. 16 22
263 107.26 wind 9.0 720 > th dose independent rect. 1 16
266 107.26 wind 9.0 270 > th dose independent rect. 16 19
267 107.27 wind 9.0 720 > th dose independent rect. 9 8
277 107.28 wind 9.0 720 > th dose dependent rect. 22 19
279 107.29 wind 9.0 720 > th dose dependent rect. 9 8
291 107.30 wind 9.0 720 < th dose independent sin 4 NA
294 107.31 wind 9.0 270 > th dose independent rect. 16 10
310 107.35 wind 9.0 720 > th dose independent sin 1 NA
317 107.38 wind 7.0 720 < th dose independent rect. 21 17
322 107.39 wind 9.0 270 > th dose independent rect. 16 7
332 107.41 wind 9.0 720 > th dose independent rect. 12 3
335 107.42 wind 9.0 720 > th dose dependent sin 1 NA
336 107.42 wind 1.0 30 > th dose dependent rect. 2 1
340 107.43 wind 7.0 720 < th dose independent rect. 11 4
343 107.43 wind 9.0 720 > th dose dependent rect. 13 2
389 107.51 precipitation 0.1 720 > th dose independent rect. 24 2
392 107.51 precipitation 0.1 720 > th dose dependent rect. 24 2
408 107.52 wind 7.0 720 < th dose independent rect. 3 19
440 107.54 wind 9.0 720 < th dose independent sin 22 NA
471 107.55 wind 9.0 270 > th dose dependent rect. 16 10
522 107.58 wind 7.0 720 < th dose independent rect. 12 1
538 107.60 wind 9.0 720 < th dose independent no NA NA
550 107.61 radiation 40.0 10 > th dose dependent rect. 9 1
557 107.61 wind 9.0 270 > th dose dependent rect. 16 7
597 107.62 wind 9.0 720 > th dose dependent no NA NA
655 107.63 wind 9.0 720 > th dose independent no NA NA
720 107.64 wind 7.0 270 < th dose independent rect. 12 11
721 107.64 wind 9.0 720 < th dose independent rect. 4 16
754 107.66 wind 3.0 10 > th dose independent rect. 10 1
796 107.71 wind 9.0 720 > th dose independent rect. 14 23
818 107.74 temperature 25.0 90 < th dose independent rect. 8 1
826 107.74 wind 9.0 270 < th dose dependent rect. 12 11
830 107.75 radiation 20.0 10 > th dose independent rect. 9 2
890 107.79 wind 9.0 10 > th dose independent rect. 13 7
911 107.82 wind 9.0 30 < th dose dependent rect. 12 13
917 107.83 wind 7.0 30 < th dose independent rect. 15 10
919 107.83 wind 7.0 30 < th dose independent rect. 12 13
920 107.83 wind 9.0 720 < th dose independent rect. 11 23
987 107.86 wind 9.0 270 < th dose dependent rect. 2 21