FiT-DB / Search/ Help/ Sample detail
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Os02g0266300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transient receptor potential cation channel subfamily A member 1 (Ankyrin-like with transmembrane domains protein 1) (Transformation sensitive-protein p120).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.23 | 0.263 | 10.6 | -0.636 | 0.993 | -0.695 | -0.956 | -0.00166 | -0.238 | 18.1 | 24.8 | 905 | -- | -- |
| 31.22 | 0.26 | 10.6 | -0.637 | 1 | -0.696 | -0.957 | -- | -0.238 | 18.2 | 24.8 | 920 | -- | -- |
| 33.34 | 0.269 | 10.6 | -0.65 | 1 | -0.678 | -- | 0.107 | -0.234 | 18.3 | 24.76 | 921 | -- | -- |
| 33.36 | 0.269 | 10.6 | -0.621 | 1 | -0.674 | -- | -- | -0.232 | 18.3 | 24.79 | 925 | -- | -- |
| 56.37 | 0.35 | 10.6 | -0.92 | -- | -1.02 | -- | 0.771 | -0.458 | -- | 25.2 | 509 | -- | -- |
| 47.26 | 0.322 | 10.5 | -0.413 | 1.09 | -- | -0.666 | -- | 0.0197 | 19 | -- | -- | -- | -- |
| 48.36 | 0.326 | 10.5 | -0.402 | 1.09 | -- | -- | -- | 0.0175 | 19.1 | -- | -- | -- | -- |
| 57.56 | 0.353 | 10.6 | -0.717 | -- | -0.99 | -- | -- | -0.387 | -- | 25.3 | 538 | -- | -- |
| 42.76 | 0.305 | 10.6 | -- | 0.992 | -0.523 | -- | -- | -0.119 | 18.5 | 24.6 | 877 | -- | -- |
| 110.58 | 0.491 | 10.5 | -0.423 | -- | -- | -- | -- | -0.002 | -- | -- | -- | -- | -- |
| 52.62 | 0.339 | 10.5 | -- | 1.09 | -- | -- | -- | 0.0622 | 19.1 | -- | -- | -- | -- |
| 69.95 | 0.39 | 10.6 | -- | -- | -0.885 | -- | -- | -0.258 | -- | 25.62 | 496 | -- | -- |
| 115.3 | 0.501 | 10.5 | -- | -- | -- | -- | -- | 0.0449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.71 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 4 | 29.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 6 | 29.45 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 20 | 30.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 19 |
| 24 | 30.55 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 25 | 30.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 27 | 30.57 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 31 | 30.64 | temperature | 30 | 90 | < th | dose dependent | sin | 8 | NA |
| 36 | 30.75 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 41 | 30.82 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 50 | 30.93 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 51 | 30.93 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 67 | 31.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 72 | 31.11 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 20 |
| 76 | 31.17 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 12 |
| 88 | 31.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 14 |
| 120 | 31.45 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 18 |
| 133 | 31.51 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 157 | 31.62 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 18 |
| 166 | 31.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 10 |
| 173 | 31.69 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 16 |
| 234 | 31.85 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 14 |
| 252 | 31.89 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 265 | 31.93 | temperature | 25 | 720 | < th | dose independent | rect. | 18 | 1 |
| 290 | 32.01 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 5 |
| 294 | 32.02 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 12 |
| 306 | 32.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 20 |
| 314 | 32.06 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 13 |
| 351 | 32.14 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 22 |
| 375 | 32.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 21 |
| 426 | 32.31 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 22 |
| 436 | 32.33 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 461 | 32.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 19 |
| 586 | 32.60 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 23 |
| 628 | 32.67 | temperature | 25 | 720 | < th | dose independent | no | NA | NA |
| 655 | 32.71 | temperature | 25 | 720 | > th | dose independent | no | NA | NA |
| 720 | 32.83 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 722 | 32.84 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 23 |
| 980 | 33.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 7 |
| 995 | 33.38 | temperature | 25 | 720 | < th | dose independent | rect. | 20 | 23 |
