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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0266200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.19 (0.0285) R2 : 0.469
β1 : 1.11 (0.105) R2dD : 0.14 R2D : 0.0986
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.44 (0.0924) R2dE : 0.278 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.461 (0.061) R2dN8 : 0.103 R2N8 : 0.0255
σ : 0.534
deviance : 131.54
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.1713
memory length : 396
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 21.9
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.31 0.534 7.2 1.09 0.3 -1.81 0.958 -1.21 0.481 5.4 0.1916 379 21.5 --
129.96 0.531 7.2 1.13 0.258 -1.67 0.185 -- 0.503 4.72 0.1179 393 22.1 --
129.45 0.53 7.2 1.11 0.391 -1.75 -- -0.242 0.493 4.98 0.2201 402 22.4 --
129.56 0.53 7.2 1.12 0.388 -1.74 -- -- 0.492 5.02 0.22 402 22.5 --
132.01 0.535 7.21 1.16 -- -1.45 -- 0.0204 0.44 -- 0.009378 406 22.2 --
157.09 0.588 7.23 1.25 0.908 -- -0.114 -- 0.476 18.2 -- -- -- --
157.12 0.587 7.23 1.25 0.907 -- -- -- 0.475 18.1 -- -- -- --
131.54 0.534 7.19 1.11 -- -1.44 -- -- 0.461 -- 0.1713 396 21.9 --
160.22 0.59 7.19 -- 0.303 -2.01 -- -- 0.424 5.44 0.009999 402 21.1 --
199.77 0.66 7.22 1.23 -- -- -- -- 0.455 -- -- -- -- --
198.58 0.659 7.27 -- 0.889 -- -- -- 0.336 18.2 -- -- -- --
162.1 0.593 7.19 -- -- -1.7 -- -- 0.427 -- 0.009236 402 20.8 --
239.59 0.722 7.25 -- -- -- -- -- 0.319 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 123.24 temperature 15.0 90 > th dose independent rect. 9 18
3 124.27 temperature 10.0 270 > th dose dependent rect. 20 16
7 124.82 temperature 15.0 270 > th dose independent rect. 6 20
8 125.25 temperature 15.0 270 > th dose independent rect. 5 22
12 126.12 wind 7.0 90 < th dose independent rect. 9 18
16 126.70 temperature 30.0 270 < th dose dependent rect. 3 2
20 127.02 temperature 30.0 90 < th dose dependent rect. 3 6
23 127.17 wind 9.0 90 < th dose dependent rect. 9 18
24 127.33 temperature 10.0 10 > th dose dependent rect. 9 18
27 127.50 wind 5.0 90 < th dose independent rect. 3 5
28 127.50 precipitation 0.1 90 < th dose independent rect. 3 6
29 127.50 temperature 15.0 270 > th dose independent rect. 6 8
30 127.50 precipitation 0.1 90 < th dose dependent rect. 3 6
31 127.51 temperature 25.0 270 < th dose independent rect. 3 2
33 127.54 temperature 10.0 90 > th dose dependent rect. 8 19
35 127.56 wind 9.0 90 < th dose dependent rect. 3 6
37 127.64 temperature 15.0 10 > th dose independent rect. 9 18
39 127.68 temperature 25.0 270 < th dose independent rect. 1 6
41 127.81 wind 7.0 10 < th dose independent rect. 9 18
43 127.81 temperature 30.0 270 < th dose dependent rect. 1 6
45 127.87 temperature 15.0 270 > th dose independent rect. 20 16
47 127.91 radiation 40.0 90 < th dose independent rect. 3 6
50 127.96 temperature 25.0 270 < th dose independent rect. 2 4
53 127.98 wind 7.0 270 < th dose independent rect. 6 8
54 127.99 temperature 30.0 90 < th dose independent rect. 3 6
55 128.05 precipitation 0.1 90 < th dose independent rect. 9 18
56 128.05 precipitation 0.1 90 < th dose dependent rect. 9 18
59 128.10 humidity 60.0 90 > th dose independent rect. 3 6
67 128.26 temperature 15.0 270 > th dose independent rect. 19 7
68 128.29 wind 7.0 270 < th dose independent rect. 6 20
70 128.30 temperature 10.0 90 > th dose independent rect. 3 6
73 128.30 atmosphere 995.0 90 > th dose independent rect. 3 6
74 128.30 atmosphere 1015.0 90 < th dose independent rect. 3 6
91 128.65 wind 5.0 270 < th dose independent rect. 1 6
103 128.74 precipitation 0.1 270 < th dose independent rect. 3 2
104 128.74 precipitation 0.1 270 < th dose dependent rect. 3 2
105 128.77 precipitation 0.1 270 < th dose independent rect. 1 6
106 128.77 precipitation 0.1 270 < th dose dependent rect. 1 6
107 128.83 wind 9.0 270 < th dose independent rect. 5 22
109 128.86 wind 5.0 270 < th dose independent rect. 3 2
123 129.16 temperature 10.0 270 > th dose dependent rect. 19 7
124 129.19 precipitation 0.1 10 < th dose independent rect. 3 6
125 129.19 precipitation 0.1 10 < th dose dependent rect. 3 6
128 129.23 wind 9.0 270 < th dose dependent rect. 6 20
134 129.36 temperature 10.0 270 > th dose dependent rect. 6 7
138 129.45 precipitation 0.1 270 < th dose independent rect. 6 8
139 129.45 precipitation 0.1 270 < th dose dependent rect. 6 8
157 129.67 atmosphere 995.0 270 > th dose independent rect. 6 8
158 129.67 atmosphere 1015.0 270 < th dose independent rect. 6 8
159 129.67 temperature 10.0 270 > th dose independent rect. 14 16
166 129.73 temperature 15.0 90 > th dose independent rect. 8 7
170 129.75 temperature 10.0 270 > th dose independent rect. 1 6
173 129.75 humidity 50.0 270 > th dose independent rect. 1 6
175 129.75 atmosphere 995.0 270 > th dose independent rect. 1 6
176 129.75 atmosphere 1015.0 270 < th dose independent rect. 1 6
177 129.75 radiation 40.0 270 < th dose independent rect. 1 6
180 129.77 radiation 40.0 270 < th dose dependent rect. 1 7
188 129.89 radiation 1.0 270 > th dose independent rect. 6 8
189 129.89 wind 9.0 270 < th dose dependent rect. 3 2
190 129.90 wind 9.0 10 < th dose dependent rect. 3 6
191 129.91 wind 9.0 270 < th dose dependent rect. 6 8
195 129.94 precipitation 0.1 270 < th dose independent rect. 6 20
197 129.94 precipitation 0.1 270 < th dose dependent rect. 6 20
216 129.97 precipitation 0.1 270 < th dose independent rect. 14 16
218 129.97 precipitation 0.1 270 < th dose dependent rect. 14 16
234 130.04 radiation 40.0 270 < th dose independent rect. 14 16
236 130.05 humidity 90.0 90 < th dose independent rect. 8 7
239 130.09 precipitation 0.1 10 < th dose independent rect. 9 18
241 130.09 precipitation 0.1 10 < th dose dependent rect. 9 18
248 130.16 temperature 10.0 270 > th dose independent rect. 3 2
251 130.16 humidity 50.0 270 > th dose independent rect. 3 2
254 130.16 atmosphere 995.0 270 > th dose independent rect. 3 2
255 130.16 atmosphere 1010.0 270 < th dose independent rect. 3 2
257 130.16 radiation 20.0 270 < th dose independent rect. 3 2
261 130.16 radiation 1.0 270 < th dose dependent rect. 3 2
266 130.21 radiation 40.0 270 < th dose dependent rect. 3 2
272 130.25 temperature 10.0 90 > th dose dependent rect. 8 7
280 130.33 radiation 40.0 270 < th dose dependent rect. 2 4
284 130.37 wind 9.0 270 < th dose independent rect. 14 16
290 130.40 radiation 1.0 270 < th dose independent rect. 3 2
300 130.45 temperature 10.0 10 > th dose independent rect. 3 6
302 130.45 temperature 30.0 10 < th dose independent rect. 3 6
303 130.45 humidity 50.0 10 > th dose independent rect. 3 6
305 130.45 atmosphere 995.0 10 > th dose independent rect. 3 6
306 130.45 atmosphere 1015.0 10 < th dose independent rect. 3 6
314 130.51 atmosphere 995.0 90 > th dose independent rect. 9 18
344 130.71 wind 7.0 90 < th dose independent rect. 8 7
354 130.78 temperature 30.0 90 < th dose dependent rect. 3 8
356 130.80 wind 9.0 270 < th dose dependent rect. 1 6
358 130.80 humidity 50.0 90 > th dose dependent rect. 3 6
386 130.97 precipitation 0.1 270 < th dose independent rect. 5 22
388 130.97 precipitation 0.1 270 < th dose dependent rect. 5 22
416 131.17 temperature 10.0 10 > th dose dependent rect. 9 5
429 131.25 atmosphere 1015.0 90 < th dose independent rect. 8 19
480 131.43 humidity 50.0 270 > th dose dependent rect. 3 2
481 131.43 radiation 1.0 270 < th dose dependent rect. 3 8
499 131.50 humidity 50.0 270 > th dose independent rect. 6 8
500 131.50 temperature 10.0 10 > th dose dependent rect. 23 15
513 131.59 precipitation 0.1 90 < th dose independent rect. 8 7
515 131.59 precipitation 0.1 90 < th dose dependent rect. 8 7
532 131.72 humidity 50.0 270 > th dose independent rect. 18 8
533 131.72 radiation 20.0 270 < th dose independent rect. 18 8
536 131.72 temperature 10.0 270 > th dose independent rect. 2 16
537 131.72 atmosphere 1015.0 270 < th dose independent rect. 2 16
539 131.73 atmosphere 995.0 270 > th dose independent rect. 14 16
541 131.74 radiation 30.0 270 < th dose dependent rect. 18 8
544 131.75 atmosphere 1015.0 90 < th dose independent rect. 8 7
552 131.76 wind 9.0 270 < th dose independent rect. 18 8
564 131.81 atmosphere 995.0 270 > th dose independent rect. 18 8
567 131.83 atmosphere 995.0 90 > th dose independent rect. 8 7
569 131.84 humidity 50.0 270 > th dose dependent rect. 2 4
593 131.93 wind 1.0 270 > th dose independent rect. 1 6
595 131.93 atmosphere 995.0 10 > th dose independent rect. 9 18
601 131.96 temperature 30.0 270 < th dose independent rect. 19 7
634 132.09 precipitation 0.1 270 < th dose independent rect. 2 16
635 132.09 precipitation 0.1 270 < th dose dependent rect. 2 16
637 132.10 humidity 50.0 270 > th dose dependent rect. 1 6
644 132.15 humidity 90.0 10 < th dose independent rect. 9 5
667 132.25 radiation 1.0 90 > th dose independent rect. 8 7
675 132.28 precipitation 0.1 270 < th dose independent rect. 18 8
678 132.28 precipitation 0.1 270 < th dose dependent rect. 18 8
707 132.39 temperature 10.0 1440 > th dose independent rect. 4 6
710 132.39 atmosphere 995.0 1440 > th dose independent rect. 4 6
711 132.39 atmosphere 1015.0 1440 < th dose independent rect. 4 6
712 132.39 temperature 10.0 1440 > th dose independent rect. 10 18
732 132.45 wind 7.0 10 < th dose independent rect. 9 7
735 132.46 wind 7.0 270 < th dose independent rect. 20 16
736 132.47 humidity 50.0 270 > th dose independent rect. 14 16
741 132.49 wind 7.0 10 < th dose independent rect. 9 5
745 132.51 radiation 1.0 270 < th dose independent rect. 2 9
751 132.53 temperature 10.0 270 > th dose dependent rect. 8 3
755 132.55 atmosphere 1015.0 10 < th dose independent rect. 9 18
795 132.64 temperature 10.0 270 > th dose dependent rect. 9 1
860 132.84 temperature 20.0 10 > th dose independent rect. 9 5
928 133.03 atmosphere 995.0 90 > th dose dependent rect. 3 5
933 133.04 radiation 1.0 270 < th dose dependent rect. 3 15
939 133.07 atmosphere 995.0 270 > th dose independent rect. 6 20
961 133.13 wind 1.0 270 > th dose independent rect. 12 8