Os02g0265200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WRKY transcription factor 39.
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Os02g0265200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WRKY transcription factor 39.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 79.63 | 0.419 | 7.9 | -0.51 | 1.2 | 1.02 | 0.841 | -0.0111 | -0.2 | 4.89 | 29.93 | 11814 | -- | -- |
| 78.13 | 0.412 | 7.87 | -0.314 | 1.2 | 1.13 | 0.857 | -- | -0.107 | 4.87 | 30.2 | 18816 | -- | -- |
| 79.86 | 0.416 | 7.86 | -0.272 | 1.22 | 1.02 | -- | -0.435 | -0.111 | 4.9 | 30.31 | 18749 | -- | -- |
| 79.86 | 0.416 | 7.88 | -0.172 | 1.22 | 1.19 | -- | -- | -0.146 | 4.94 | 24.88 | 21428 | -- | -- |
| 140.84 | 0.556 | 7.94 | -0.869 | -- | 1.28 | -- | -0.0421 | -0.297 | -- | 30.31 | 18749 | -- | -- |
| 96.36 | 0.46 | 7.98 | -1.2 | 1.19 | -- | 0.823 | -- | -0.554 | 4.93 | -- | -- | -- | -- |
| 98.09 | 0.464 | 7.98 | -1.2 | 1.2 | -- | -- | -- | -0.558 | 4.99 | -- | -- | -- | -- |
| 140.85 | 0.555 | 7.94 | -0.876 | -- | 1.28 | -- | -- | -0.299 | -- | 30.31 | 18749 | -- | -- |
| 79.97 | 0.416 | 7.88 | -- | 1.22 | 1.24 | -- | -- | -0.12 | 4.92 | 23.59 | 25678 | -- | -- |
| 173.39 | 0.615 | 7.99 | -1.16 | -- | -- | -- | -- | -0.528 | -- | -- | -- | -- | -- |
| 135.98 | 0.545 | 7.95 | -- | 1.18 | -- | -- | -- | -0.425 | 5.02 | -- | -- | -- | -- |
| 156.82 | 0.583 | 7.9 | -- | -- | 1.2 | -- | -- | -0.116 | -- | 22.94 | 24947 | -- | -- |
| 208.62 | 0.674 | 7.96 | -- | -- | -- | -- | -- | -0.399 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.30 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 2 | 77.33 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 3 | 77.36 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 4 | 77.41 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 5 | 77.44 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 7 | 77.49 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 8 | 77.50 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 12 | 77.54 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 17 | 77.62 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 23 | 77.68 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 11 |
| 34 | 77.73 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 39 | 77.75 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 47 | 77.80 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 2 | 6 |
| 48 | 77.81 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 51 | 77.81 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 2 | 6 |
| 53 | 77.81 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 55 | 77.82 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 13 |
| 62 | 77.83 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 66 | 77.84 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 14 | 4 |
| 71 | 77.85 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 75 | 77.86 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 82 | 77.87 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 109 | 77.89 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 111 | 77.89 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 16 | 3 |
| 127 | 77.91 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 132 | 77.91 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 23 | 4 |
| 283 | 78.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 7 | 8 |
| 473 | 78.19 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 474 | 78.19 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 479 | 78.20 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 552 | 78.26 | humidity | 80.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 660 | 78.36 | humidity | 90.0 | 43200 | < th | dose independent | sin | 22 | NA |
| 849 | 78.48 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 985 | 78.56 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |