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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0265100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to WRKY transcription factor 39.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0145) R2 : 0.00452
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0438 (0.0304) R2dN8 : 0.00584 R2N8 : 0.00452
σ : 0.272
deviance : 34.05
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.54 0.26 3.03 -0.154 0.173 -0.169 -0.596 0.00665 0.0388 5.58 8.335 4581 -- --
30.52 0.257 3.03 -0.157 0.176 -0.17 -0.597 -- 0.0376 5.6 8.195 4541 -- --
31.22 0.26 3.02 -0.164 0.161 -0.179 -- 0.0568 0.0697 5.44 8.2 4996 -- --
31.22 0.26 3.02 -0.165 0.151 -0.185 -- -- 0.07 5.45 8.201 4996 -- --
32.39 0.265 3.03 -0.174 -- -0.206 -- 0.104 0.0728 -- 8.281 4996 -- --
31.27 0.262 3.03 -0.0997 0.181 -- -0.598 -- 0.0262 5.29 -- -- -- --
32.16 0.266 3.03 -0.1 0.178 -- -- -- 0.029 5.46 -- -- -- --
32.37 0.265 3.02 -0.183 -- -0.237 -- -- 0.0835 -- 8.219 4996 -- --
31.89 0.263 3.02 -- 0.157 -0.138 -- -- 0.0774 5.52 8.3 4996 -- --
33.81 0.272 3.03 -0.0943 -- -- -- -- 0.0334 -- -- -- -- --
32.43 0.266 3.03 -- 0.176 -- -- -- 0.0402 5.49 -- -- -- --
32.46 0.265 3 -- -- -0.248 -- -- 0.162 -- 10.78 5059 -- --
34.05 0.272 3.03 -- -- -- -- -- 0.0438 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.98 humidity 90.0 270 < th dose independent rect. 3 2
2 28.22 atmosphere 1005.0 10 > th dose dependent rect. 2 6
4 28.32 humidity 90.0 270 < th dose dependent rect. 3 2
8 28.46 humidity 90.0 270 < th dose independent rect. 2 4
20 28.64 atmosphere 1005.0 270 > th dose dependent rect. 2 1
24 28.72 humidity 90.0 10 < th dose dependent rect. 3 3
43 28.96 temperature 20.0 270 < th dose dependent rect. 3 2
60 29.06 radiation 1.0 270 > th dose independent rect. 4 1
70 29.06 radiation 1.0 270 > th dose dependent rect. 4 1
72 29.06 humidity 80.0 270 < th dose dependent rect. 24 3
102 29.14 humidity 90.0 30 < th dose independent rect. 2 4
139 29.34 humidity 80.0 1440 > th dose independent rect. 2 1
157 29.35 humidity 80.0 1440 > th dose independent rect. 24 3
162 29.36 humidity 80.0 1440 > th dose independent rect. 2 3
208 29.40 humidity 80.0 10 < th dose independent rect. 23 7
212 29.40 humidity 80.0 10 < th dose dependent rect. 24 6
242 29.42 humidity 80.0 10 < th dose independent rect. 5 1
265 29.44 temperature 20.0 270 < th dose independent rect. 3 1
266 29.44 temperature 20.0 270 < th dose independent rect. 1 4
377 29.71 atmosphere 1005.0 10 > th dose independent rect. 2 6
432 29.78 temperature 30.0 90 < th dose dependent rect. 1 7
447 29.82 temperature 10.0 90 > th dose dependent rect. 21 14
456 29.85 wind 1.0 90 > th dose independent rect. 1 7
461 29.86 temperature 30.0 10 < th dose dependent rect. 2 6
464 29.87 atmosphere 1005.0 270 > th dose independent rect. 1 4
477 29.90 wind 5.0 10 < th dose independent rect. 2 6
478 29.90 atmosphere 1000.0 90 > th dose independent rect. 21 14
487 29.91 atmosphere 1005.0 270 > th dose independent rect. 2 1
495 29.91 temperature 20.0 30 < th dose independent rect. 2 6
561 29.99 atmosphere 1000.0 10 > th dose independent rect. 8 18
602 30.02 humidity 50.0 90 > th dose independent rect. 21 14
605 30.02 temperature 25.0 90 > th dose dependent rect. 2 2
613 30.03 temperature 10.0 43200 > th dose independent rect. 9 1
620 30.03 temperature 10.0 90 > th dose independent rect. 11 10
621 30.03 atmosphere 1000.0 90 > th dose independent rect. 11 10
622 30.03 atmosphere 1015.0 90 < th dose independent rect. 11 10
624 30.03 temperature 10.0 90 > th dose independent rect. 21 14
639 30.04 wind 9.0 90 < th dose independent rect. 21 14
640 30.04 temperature 30.0 90 < th dose independent rect. 21 14
644 30.05 humidity 80.0 1440 > th dose independent rect. 5 1
648 30.05 precipitation 0.1 90 < th dose independent rect. 11 10
655 30.05 precipitation 0.1 90 < th dose dependent rect. 11 10
661 30.06 precipitation 0.1 90 < th dose independent rect. 21 14
662 30.06 precipitation 0.1 10 < th dose independent rect. 8 18
669 30.06 precipitation 0.1 90 < th dose dependent rect. 21 14
670 30.06 precipitation 0.1 10 < th dose dependent rect. 8 18
671 30.07 wind 1.0 270 > th dose independent rect. 1 4
674 30.07 precipitation 0.1 10 < th dose independent rect. 2 6
683 30.07 precipitation 0.1 10 < th dose dependent rect. 2 6
693 30.08 wind 9.0 90 < th dose independent rect. 11 10
703 30.09 temperature 10.0 10 > th dose independent rect. 2 6
705 30.09 temperature 30.0 10 < th dose independent rect. 2 6
706 30.09 humidity 50.0 10 > th dose independent rect. 2 6
708 30.09 atmosphere 995.0 10 > th dose independent rect. 2 6
709 30.09 atmosphere 1015.0 10 < th dose independent rect. 2 6
710 30.09 wind 1.0 90 > th dose independent rect. 11 10
711 30.09 temperature 30.0 270 < th dose independent rect. 10 11
713 30.09 temperature 10.0 10 > th dose independent rect. 8 18
716 30.09 temperature 25.0 90 > th dose dependent rect. 1 4
717 30.09 temperature 30.0 270 < th dose dependent rect. 1 4
746 30.11 temperature 25.0 90 > th dose independent rect. 2 2
749 30.11 wind 5.0 270 < th dose independent rect. 1 4
752 30.11 humidity 50.0 30 > th dose independent rect. 8 18
785 30.13 wind 9.0 1440 < th dose independent rect. 3 6
786 30.13 temperature 10.0 1440 > th dose independent rect. 3 6
789 30.13 humidity 50.0 1440 > th dose independent rect. 3 6
791 30.13 atmosphere 995.0 1440 > th dose independent rect. 3 6
796 30.13 temperature 10.0 1440 > th dose independent rect. 9 18
800 30.13 wind 9.0 30 < th dose dependent rect. 2 6
810 30.14 radiation 40.0 90 < th dose independent rect. 11 10
812 30.14 wind 9.0 30 < th dose independent rect. 8 18
813 30.14 wind 1.0 270 > th dose independent rect. 9 21
840 30.15 wind 1.0 270 > th dose independent rect. 23 7
842 30.15 wind 1.0 270 > th dose independent rect. 11 18
862 30.16 temperature 20.0 90 > th dose independent rect. 21 14
881 30.17 radiation 1.0 720 < th dose dependent rect. 18 9
925 30.18 atmosphere 995.0 10 > th dose dependent rect. 8 18
928 30.19 precipitation 0.1 1440 > th dose independent rect. 10 3
936 30.19 atmosphere 995.0 90 > th dose dependent rect. 8 3
937 30.19 radiation 1.0 90 > th dose dependent rect. 8 3
938 30.19 precipitation 0.1 1440 > th dose dependent rect. 10 3
950 30.20 temperature 20.0 720 > th dose independent rect. 23 1
977 30.21 temperature 30.0 30 < th dose independent rect. 8 18
990 30.22 radiation 10.0 90 > th dose independent rect. 8 3
993 30.22 radiation 40.0 90 < th dose independent rect. 1 7
998 30.22 wind 1.0 90 > th dose independent rect. 1 20
999 30.22 radiation 40.0 90 < th dose independent rect. 11 20