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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0263300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.73 (0.0298) R2 : 0.207
β1 : -0.196 (0.109) R2dD : 0.00582 R2D : 0.00419
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.05 (0.22) R2dE : 0.161 R2E : 0.0924
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.16 (0.936) R2dD*E : 0.109 R2D*E : 0.042
γ1 : 0.0307 (0.0637) R2dN8 : 0.000537 R2N8 : -0.000349
σ : 0.556
deviance : 142.74
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1005
memory length : 93
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.4
open length of G : 0.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.26 0.558 2.73 -0.218 0.0247 2.03 -0.659 -6.82 0.0292 21 1005 90 20.3 1.03
157.23 0.584 2.73 -0.221 0.0153 1.63 -1.04 -- 0.0271 20.9 1005 90 20.4 2.2
142.18 0.555 2.73 -0.195 0.0966 2.02 -- -7.13 0.0253 2.33 1005 93 20.5 0.913
160.35 0.59 2.73 -0.185 0.0984 1.59 -- -- 0.0169 2.16 1005 87 20.5 1.48
142.74 0.556 2.73 -0.196 -- 2.05 -- -7.16 0.0307 -- 1005 93 20.4 0.95
175.07 0.62 2.74 -0.207 0.15 -- -0.849 -- -0.0152 21.9 -- -- -- --
177.5 0.624 2.74 -0.178 0.169 -- -- -- -0.0157 23.9 -- -- -- --
160.88 0.591 2.74 -0.176 -- 1.65 -- -- 0.0238 -- 1005 101 20.1 1.98
161.27 0.591 2.73 -- 0.0951 1.58 -- -- 0.03 2.23 1005 85 20 1.95
179.29 0.626 2.73 -0.173 -- -- -- -- -0.0134 -- -- -- -- --
178.33 0.625 2.73 -- 0.167 -- -- -- 0.00414 23.8 -- -- -- --
161.75 0.592 2.74 -- -- 1.62 -- -- 0.0299 -- 1005 101 20.3 1.89
180.08 0.626 2.73 -- -- -- -- -- 0.00571 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 141.93 atmosphere 1005.0 90 < th dose independent rect. 20 1
16 154.76 temperature 20.0 90 < th dose dependent rect. 7 5
20 154.85 temperature 20.0 90 < th dose dependent rect. 7 11
25 154.99 temperature 20.0 90 < th dose independent rect. 7 5
26 154.99 temperature 20.0 10 < th dose independent rect. 7 6
38 155.09 temperature 20.0 90 < th dose independent rect. 7 11
45 155.13 temperature 20.0 10 < th dose independent rect. 7 11
60 155.25 wind 5.0 10 > th dose independent rect. 8 1
62 155.25 wind 5.0 10 > th dose dependent rect. 8 1
64 155.26 temperature 20.0 30 < th dose independent rect. 7 1
75 155.26 temperature 20.0 30 < th dose dependent rect. 7 1
120 155.68 humidity 90.0 90 > th dose dependent rect. 20 1
166 157.44 humidity 80.0 10 > th dose independent rect. 21 1
170 158.00 atmosphere 1005.0 30 < th dose dependent rect. 21 1
185 158.85 wind 3.0 90 > th dose dependent rect. 6 1
210 159.92 wind 3.0 30 > th dose independent rect. 6 2
227 160.51 wind 1.0 10 > th dose dependent rect. 6 2
232 160.75 humidity 90.0 90 > th dose dependent rect. 17 5
233 160.76 temperature 20.0 10 > th dose independent rect. 21 1
238 160.79 humidity 80.0 90 < th dose dependent rect. 6 1
285 161.93 humidity 90.0 90 > th dose dependent rect. 13 9
293 162.17 humidity 80.0 90 < th dose independent rect. 6 1
294 162.17 atmosphere 1005.0 10 < th dose independent rect. 18 5
298 162.20 wind 3.0 10 > th dose dependent rect. 2 7
365 163.30 wind 3.0 30 > th dose independent rect. 2 6
412 163.80 radiation 10.0 10 < th dose independent rect. 8 1
438 164.17 humidity 80.0 270 < th dose dependent rect. 4 3
440 164.19 humidity 80.0 270 < th dose independent rect. 4 3
481 164.98 atmosphere 1000.0 90 > th dose independent rect. 6 2
496 165.17 temperature 20.0 270 < th dose independent rect. 4 4
559 165.60 temperature 15.0 10 > th dose dependent rect. 21 1
566 165.66 temperature 15.0 90 > th dose dependent rect. 20 2
569 165.67 atmosphere 1010.0 10 < th dose independent rect. 6 2
577 165.75 radiation 30.0 10 < th dose independent rect. 6 2
581 165.76 temperature 20.0 90 < th dose independent rect. 6 15
582 165.77 humidity 70.0 10 > th dose independent rect. 6 2
597 165.84 temperature 25.0 10 > th dose dependent rect. 21 1
624 166.01 temperature 20.0 270 < th dose independent rect. 4 8
631 166.04 wind 7.0 90 < th dose independent rect. 20 2
664 166.24 atmosphere 995.0 14400 > th dose independent rect. 7 2
687 166.38 wind 5.0 90 < th dose independent rect. 6 2
694 166.44 wind 9.0 1440 < th dose independent rect. 7 2
695 166.44 temperature 10.0 1440 > th dose independent rect. 7 2
699 166.44 humidity 50.0 1440 > th dose independent rect. 7 2
702 166.44 atmosphere 1000.0 30 > th dose independent rect. 20 2
703 166.44 atmosphere 1015.0 1440 < th dose independent rect. 7 2
704 166.44 precipitation 0.1 30 < th dose independent rect. 6 2
705 166.44 temperature 10.0 1440 > th dose independent rect. 9 22
709 166.44 precipitation 0.1 30 < th dose dependent rect. 6 2
714 166.45 wind 9.0 30 < th dose independent rect. 8 22
719 166.47 temperature 10.0 30 > th dose independent rect. 6 2
722 166.47 humidity 50.0 30 > th dose independent rect. 6 2
727 166.47 temperature 10.0 30 > th dose independent rect. 8 22
737 166.48 radiation 1.0 90 > th dose independent rect. 6 2
743 166.51 atmosphere 995.0 90 > th dose dependent rect. 6 2
752 166.54 atmosphere 995.0 10 > th dose dependent rect. 7 1
781 166.64 precipitation 0.1 90 < th dose independent rect. 8 22
784 166.64 precipitation 0.1 90 < th dose dependent rect. 8 22
789 166.67 temperature 10.0 1440 > th dose independent rect. 21 2
792 166.67 temperature 30.0 1440 < th dose independent rect. 21 2
796 166.67 humidity 50.0 1440 > th dose independent rect. 21 2
802 166.67 atmosphere 995.0 1440 > th dose independent rect. 21 2
803 166.67 radiation 1.0 1440 < th dose independent rect. 21 2
823 166.67 temperature 10.0 1440 > th dose independent rect. 23 22
826 166.67 radiation 1.0 1440 < th dose dependent rect. 21 2
886 166.82 temperature 10.0 30 > th dose independent rect. 20 2
888 166.82 temperature 30.0 30 < th dose independent rect. 20 2
889 166.82 humidity 50.0 30 > th dose independent rect. 20 2
895 166.82 radiation 1.0 30 < th dose independent rect. 20 2
900 166.82 temperature 10.0 30 > th dose independent rect. 22 22
901 166.82 radiation 1.0 30 < th dose dependent rect. 20 2
907 166.83 precipitation 0.1 30 < th dose independent rect. 20 2
910 166.83 precipitation 0.1 30 < th dose dependent rect. 20 2
945 166.88 radiation 40.0 90 < th dose dependent rect. 6 1
967 166.90 humidity 70.0 90 > th dose dependent rect. 17 6
991 166.92 precipitation 0.1 30 < th dose independent rect. 22 22
996 166.92 precipitation 0.1 30 < th dose dependent rect. 22 22