Os02g0261900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os02g0261900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 361.25 | 0.893 | 5.91 | -3.32 | 0.387 | -1.33 | -0.434 | -2.64 | 0.378 | 11.9 | 26.3 | 4014 | -- | -- |
| 365.88 | 0.891 | 5.84 | -2.74 | 0.404 | -1.4 | -0.285 | -- | 0.495 | 11.8 | 26.2 | 4010 | -- | -- |
| 362.01 | 0.886 | 5.91 | -3.31 | 0.388 | -1.34 | -- | -2.51 | 0.382 | 11.6 | 26.3 | 4013 | -- | -- |
| 365.64 | 0.891 | 5.82 | -2.66 | 0.383 | -1.51 | -- | -- | 0.564 | 11.5 | 26.3 | 4013 | -- | -- |
| 370.63 | 0.897 | 5.91 | -3.27 | -- | -1.41 | -- | -2.39 | 0.402 | -- | 26.2 | 3903 | -- | -- |
| 425.57 | 0.967 | 5.88 | -3.17 | 0.561 | -- | -0.202 | -- | 0.318 | 12.2 | -- | -- | -- | -- |
| 425.74 | 0.966 | 5.88 | -3.18 | 0.562 | -- | -- | -- | 0.317 | 12.1 | -- | -- | -- | -- |
| 373.71 | 0.9 | 5.82 | -2.63 | -- | -1.6 | -- | -- | 0.587 | -- | 26.3 | 3903 | -- | -- |
| 378.45 | 0.906 | 5.61 | -- | 0.478 | -2.6 | -- | -- | 1.58 | 12 | 22.1 | 47520 | -- | -- |
| 445.63 | 0.986 | 5.89 | -3.2 | -- | -- | -- | -- | 0.309 | -- | -- | -- | -- | -- |
| 692.62 | 1.23 | 5.8 | -- | 0.607 | -- | -- | -- | 0.672 | 12.4 | -- | -- | -- | -- |
| 393.65 | 0.924 | 5.6 | -- | -- | -2.65 | -- | -- | 1.57 | -- | 21.59 | 47520 | -- | -- |
| 715.76 | 1.25 | 5.81 | -- | -- | -- | -- | -- | 0.664 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 361.51 | temperature | 25 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 2 | 361.63 | temperature | 25 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 101 | 364.25 | temperature | 25 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 105 | 364.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 134 | 364.80 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 144 | 364.91 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 153 | 365.03 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 156 | 365.05 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 163 | 365.14 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 164 | 365.15 | temperature | 25 | 43200 | < th | dose independent | sin | 12 | NA |
| 166 | 365.16 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 20 |
| 168 | 365.18 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 170 | 365.20 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 178 | 365.38 | temperature | 25 | 43200 | > th | dose independent | sin | 12 | NA |
| 188 | 365.47 | temperature | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 212 | 365.71 | radiation | 40 | 4320 | > th | dose independent | sin | 11 | NA |
| 216 | 365.71 | temperature | 25 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 218 | 365.74 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 4 |
| 256 | 365.89 | radiation | 30 | 4320 | > th | dose dependent | sin | 10 | NA |
| 275 | 366.03 | temperature | 25 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 292 | 366.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 13 |
| 298 | 366.20 | temperature | 25 | 1440 | < th | dose independent | rect. | 1 | 8 |
| 316 | 366.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 317 | 366.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 329 | 366.39 | radiation | 40 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 330 | 366.39 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 13 |
| 337 | 366.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 3 |
| 349 | 366.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 14 |
| 351 | 366.52 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 352 | 366.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 367 | 366.58 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 416 | 366.71 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 6 |
| 448 | 366.84 | temperature | 25 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 449 | 366.85 | radiation | 40 | 4320 | > th | dose independent | rect. | 14 | 21 |
| 462 | 366.90 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 3 |
| 471 | 366.93 | temperature | 25 | 43200 | > th | dose dependent | sin | 11 | NA |
| 499 | 367.01 | radiation | 40 | 4320 | < th | dose independent | rect. | 2 | 9 |
| 516 | 367.04 | temperature | 25 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 517 | 367.05 | temperature | 15 | 4320 | > th | dose dependent | rect. | 24 | 13 |
| 521 | 367.06 | radiation | 40 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 549 | 367.11 | radiation | 40 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 635 | 367.32 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 719 | 367.50 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 722 | 367.51 | temperature | 25 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 733 | 367.53 | temperature | 15 | 4320 | > th | dose dependent | sin | 5 | NA |
| 743 | 367.54 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 9 |
| 765 | 367.56 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 769 | 367.56 | temperature | 30 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 826 | 367.61 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 830 | 367.62 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 926 | 367.69 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 963 | 367.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |