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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0261300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0428) R2 : 0.616
β1 : 1.12 (0.158) R2dD : 0.0447 R2D : -0.0473
β2 : 2.2 (0.105) R2dC : 0.374 R2C : 0.364
β3 : 1.02 (0.137) R2dE : 0.0504 R2E : -0.0171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.3 (0.0927) R2dN8 : 0.231 R2N8 : 0.127
σ : 0.798
deviance : 293.56
__
_____
C
peak time of C : 2.45
E
wheather : humidity
threshold : 73
memory length : 1508
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
292.22 0.803 4.73 1.11 2.29 0.955 0.633 0.39 1.3 2.43 70.07 1444 -- --
292.52 0.797 4.72 1.16 2.24 1.02 0.654 -- 1.31 2.42 70.24 1490 -- --
293.65 0.798 4.74 1.08 2.3 0.939 -- 0.414 1.29 2.45 70.1 1445 -- --
293.56 0.798 4.72 1.12 2.2 1.02 -- -- 1.3 2.45 73 1508 -- --
374.72 0.902 4.75 1.28 -- 1.58 -- 0.638 1.27 -- 80 76 -- --
329.31 0.851 4.76 0.944 2.28 -- 0.389 -- 1.17 2.4 -- -- -- --
329.85 0.851 4.76 0.933 2.28 -- -- -- 1.17 2.42 -- -- -- --
371.77 0.898 4.74 1.04 -- 1.6 -- -- 1.29 -- 83 70 -- --
325 0.84 4.76 -- 2.11 1.16 -- -- 1.2 2 73 1814 -- --
637.06 1.18 4.74 1.03 -- -- -- -- 1.23 -- -- -- -- --
352.8 0.879 4.78 -- 2.3 -- -- -- 1.07 2.43 -- -- -- --
395.24 0.926 4.77 -- -- 1.6 -- -- 1.12 -- 82.46 71 -- --
665.02 1.2 4.77 -- -- -- -- -- 1.11 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.33 humidity 70 720 > th dose independent rect. 15 7
2 283.55 temperature 30 720 < th dose independent rect. 17 14
6 285.62 humidity 70 720 > th dose independent rect. 15 16
7 285.73 humidity 80 90 > th dose dependent rect. 5 20
16 287.11 temperature 30 720 < th dose independent rect. 17 5
19 287.60 wind 1 14400 < th dose independent rect. 14 1
23 288.11 humidity 70 1440 > th dose independent rect. 17 20
26 288.39 humidity 70 720 < th dose independent rect. 15 17
27 288.41 wind 1 14400 < th dose dependent rect. 14 1
30 288.68 humidity 70 1440 < th dose independent rect. 17 20
37 288.91 humidity 50 720 > th dose dependent rect. 17 5
38 288.99 humidity 50 720 > th dose dependent rect. 19 2
43 289.17 humidity 70 1440 > th dose independent rect. 10 2
44 289.18 humidity 70 720 > th dose independent sin 13 NA
47 289.25 humidity 70 720 < th dose independent rect. 15 5
70 289.82 wind 1 14400 > th dose independent rect. 14 1
82 290.17 humidity 90 720 < th dose dependent rect. 15 19
86 290.25 humidity 90 720 < th dose dependent rect. 15 17
91 290.31 humidity 70 720 > th dose independent rect. 19 10
97 290.44 humidity 80 1440 < th dose independent rect. 5 9
102 290.57 humidity 70 720 > th dose independent rect. 19 2
109 290.67 humidity 70 1440 < th dose independent rect. 10 2
111 290.69 humidity 80 1440 < th dose dependent rect. 15 21
144 291.27 humidity 80 720 > th dose independent rect. 4 18
147 291.31 humidity 50 720 > th dose dependent rect. 10 13
149 291.34 humidity 80 1440 > th dose independent rect. 5 9
153 291.38 humidity 60 1440 > th dose independent rect. 15 2
157 291.40 humidity 70 1440 < th dose independent rect. 9 23
158 291.41 humidity 70 1440 < th dose dependent rect. 15 2
162 291.46 humidity 70 1440 > th dose independent rect. 9 23
172 291.53 humidity 80 10 > th dose dependent rect. 6 20
176 291.56 humidity 70 1440 < th dose independent rect. 9 11
206 291.69 humidity 80 1440 < th dose independent rect. 6 4
210 291.71 humidity 50 720 > th dose dependent rect. 11 11
234 291.80 humidity 70 720 < th dose independent sin 13 NA
235 291.80 humidity 70 1440 > th dose independent rect. 9 16
277 292.18 humidity 70 1440 > th dose independent rect. 5 20
293 292.21 humidity 70 1440 > th dose independent rect. 6 15
314 292.23 humidity 70 1440 > th dose independent rect. 24 23
315 292.24 humidity 70 1440 > th dose independent no NA NA
316 292.24 humidity 70 1440 < th dose independent no NA NA
317 292.24 humidity 70 1440 < th dose independent rect. 6 14
369 292.24 humidity 70 1440 > th dose independent rect. 21 23
381 292.24 humidity 80 1440 < th dose dependent sin 11 NA
385 292.25 humidity 70 1440 > th dose independent rect. 24 21
459 292.41 humidity 80 10 > th dose independent rect. 6 18
483 292.53 humidity 80 1440 < th dose dependent rect. 19 23
505 292.65 humidity 80 1440 < th dose dependent rect. 9 23
509 292.68 humidity 70 720 > th dose independent sin 18 NA
515 292.73 humidity 80 1440 < th dose dependent no NA NA
520 292.76 humidity 80 1440 < th dose dependent rect. 5 23
523 292.77 humidity 80 1440 < th dose dependent rect. 23 23
539 292.79 humidity 80 1440 < th dose dependent rect. 2 23
562 292.86 humidity 80 10 > th dose independent rect. 6 20
605 292.97 humidity 80 1440 < th dose independent sin 5 NA
606 292.97 radiation 20 1440 < th dose independent rect. 16 18
608 292.98 humidity 50 720 > th dose dependent sin 18 NA
625 293.01 humidity 70 1440 < th dose independent sin 20 NA
641 293.10 radiation 20 1440 > th dose independent rect. 16 18
644 293.11 humidity 50 720 > th dose dependent rect. 17 14
672 293.19 radiation 20 1440 > th dose dependent rect. 16 16
716 293.38 humidity 70 1440 > th dose independent sin 23 NA
717 293.38 temperature 25 720 > th dose dependent rect. 15 10
728 293.42 humidity 80 90 > th dose independent rect. 5 20
785 293.61 radiation 20 1440 < th dose independent rect. 16 20
788 293.62 humidity 80 10 > th dose dependent rect. 6 18
800 293.68 humidity 80 1440 > th dose independent rect. 6 4
804 293.69 humidity 70 1440 < th dose independent sin 10 NA
814 293.71 humidity 80 1440 > th dose independent sin 5 NA
821 293.72 humidity 50 720 > th dose dependent rect. 4 18
829 293.76 radiation 20 1440 < th dose dependent rect. 11 1
982 294.25 radiation 20 1440 > th dose independent rect. 16 16