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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0260000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.06 (0.0171) R2 : 0.00469
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0527 (0.0359) R2dN8 : 0.00606 R2N8 : 0.00469
σ : 0.321
deviance : 47.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.9 0.308 3.07 -0.12 0.0496 -0.404 -0.122 1.59 0.0337 10.6 1.021 16 -- --
45.03 0.313 3.05 -0.0647 0.0534 -0.287 -0.0775 -- 0.0554 9.68 1.1 14 -- --
42.96 0.305 3.07 -0.123 0.0503 -0.405 -- 1.56 0.0336 10.9 1.032 16 -- --
45.04 0.313 3.06 -0.058 0.0565 -0.285 -- -- 0.0512 9.72 1.1 14 -- --
43.11 0.306 3.07 -0.124 -- -0.399 -- 1.57 0.0334 -- 1.038 16 -- --
46.77 0.321 3.06 -0.0233 0.105 -- -0.167 -- 0.0474 6.48 -- -- -- --
46.84 0.32 3.06 -0.0256 0.104 -- -- -- 0.048 6.48 -- -- -- --
45.23 0.313 3.06 -0.0581 -- -0.288 -- -- 0.0512 -- 1.063 14 -- --
45.12 0.313 3.06 -- 0.0556 -0.275 -- -- 0.0532 9.7 1.1 14 -- --
47.4 0.322 3.06 -0.0229 -- -- -- -- 0.0501 -- -- -- -- --
46.85 0.32 3.06 -- 0.104 -- -- -- 0.0508 6.5 -- -- -- --
45.31 0.314 3.06 -- -- -0.281 -- -- 0.0575 -- 1.092 14 -- --
47.41 0.321 3.06 -- -- -- -- -- 0.0527 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.42 wind 1.0 30 < th dose independent rect. 2 1
3 37.48 wind 3.0 30 < th dose dependent rect. 2 1
4 37.49 atmosphere 1005.0 30 > th dose dependent rect. 2 1
9 37.52 temperature 15.0 30 > th dose independent rect. 3 23
13 37.53 temperature 10.0 30 > th dose independent rect. 2 1
15 37.53 temperature 25.0 30 < th dose independent rect. 2 1
17 37.53 humidity 50.0 30 > th dose independent rect. 2 1
20 37.53 atmosphere 995.0 30 > th dose independent rect. 2 1
21 37.53 atmosphere 1010.0 30 < th dose independent rect. 2 1
23 37.53 radiation 1.0 30 < th dose independent rect. 2 1
28 37.53 precipitation 0.1 30 < th dose independent rect. 2 1
31 37.53 temperature 10.0 30 > th dose dependent rect. 2 1
33 37.53 humidity 50.0 30 > th dose dependent rect. 2 1
34 37.53 radiation 1.0 30 < th dose dependent rect. 2 1
39 37.53 precipitation 0.1 30 < th dose dependent rect. 2 1
45 37.54 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 37.57 atmosphere 1005.0 30 > th dose independent rect. 2 1
51 37.57 temperature 30.0 30 < th dose dependent rect. 2 1
57 37.71 wind 9.0 30 < th dose independent rect. 3 23
74 37.82 wind 1.0 30 > th dose independent rect. 2 1
110 38.65 atmosphere 1000.0 30 > th dose independent rect. 3 23
113 38.83 precipitation 0.1 30 < th dose independent rect. 3 23
115 38.83 precipitation 0.1 30 < th dose dependent rect. 3 23
129 39.63 radiation 1.0 43200 < th dose dependent rect. 3 1
136 39.73 wind 9.0 1440 < th dose independent rect. 3 1
137 39.73 temperature 10.0 1440 > th dose independent rect. 3 1
140 39.73 temperature 30.0 1440 < th dose independent rect. 3 1
144 39.73 humidity 50.0 1440 > th dose independent rect. 3 1
153 39.73 atmosphere 995.0 1440 > th dose independent rect. 3 1
154 39.73 radiation 1.0 1440 < th dose independent rect. 3 1
174 39.73 temperature 10.0 1440 > th dose independent rect. 4 23
177 39.73 radiation 1.0 1440 < th dose dependent rect. 3 1
203 40.24 humidity 50.0 30 > th dose independent rect. 3 23
208 40.46 humidity 90.0 90 < th dose independent rect. 2 1
246 41.20 wind 1.0 10 < th dose independent rect. 8 19
274 41.87 atmosphere 1015.0 30 < th dose independent rect. 3 23
356 42.97 wind 1.0 10 < th dose independent rect. 15 12
361 42.98 wind 1.0 10 < th dose independent rect. 17 10
365 42.98 humidity 50.0 30 > th dose dependent rect. 3 23
371 43.00 wind 1.0 10 > th dose independent sin 18 NA
372 43.00 temperature 30.0 30 < th dose independent rect. 3 23
373 43.01 wind 1.0 10 < th dose independent rect. 11 16
382 43.06 wind 1.0 10 < th dose independent rect. 2 8
389 43.08 radiation 40.0 30 < th dose dependent rect. 3 23
392 43.09 wind 1.0 30 > th dose independent rect. 3 23
393 43.09 wind 1.0 30 > th dose dependent rect. 2 1
396 43.09 wind 9.0 30 < th dose dependent rect. 3 23
425 43.13 temperature 25.0 270 > th dose independent rect. 23 4
437 43.22 atmosphere 1015.0 1440 < th dose independent rect. 3 1
490 43.41 wind 1.0 10 > th dose independent sin 4 NA
496 43.43 wind 1.0 10 > th dose independent rect. 21 23
504 43.47 wind 1.0 10 > th dose independent no NA NA
536 43.62 atmosphere 995.0 30 > th dose dependent rect. 3 23
540 43.65 humidity 70.0 720 > th dose independent rect. 3 6
580 43.79 radiation 40.0 30 < th dose independent rect. 3 23
582 43.79 wind 1.0 30 < th dose dependent rect. 9 18
601 43.86 humidity 90.0 10 > th dose independent rect. 24 3
612 43.89 humidity 70.0 1440 < th dose dependent rect. 7 2
618 43.90 wind 1.0 10 < th dose independent sin 18 NA
633 43.91 wind 1.0 10 > th dose independent rect. 14 23
635 43.92 wind 1.0 10 > th dose independent rect. 8 23
668 44.00 atmosphere 995.0 720 > th dose independent rect. 23 16
669 44.00 wind 1.0 10 > th dose independent rect. 23 23
670 44.00 radiation 10.0 30 < th dose independent rect. 3 23
685 44.01 precipitation 0.1 720 < th dose independent rect. 15 8
687 44.01 precipitation 0.1 720 < th dose dependent rect. 15 8
688 44.01 radiation 30.0 10 < th dose dependent rect. 15 11
695 44.03 temperature 10.0 720 > th dose independent rect. 15 8
696 44.03 temperature 10.0 720 > th dose independent rect. 23 16
711 44.09 humidity 80.0 1440 < th dose independent rect. 23 8
752 44.12 humidity 80.0 270 < th dose independent rect. 24 7
760 44.13 radiation 10.0 10 < th dose independent rect. 14 12
763 44.14 humidity 70.0 720 < th dose independent rect. 6 3
799 44.16 humidity 70.0 30 < th dose dependent rect. 7 3
818 44.17 temperature 10.0 720 > th dose independent rect. 3 8
820 44.17 atmosphere 995.0 720 > th dose independent rect. 3 8
828 44.17 temperature 10.0 720 > th dose independent rect. 11 16
872 44.22 humidity 50.0 720 > th dose independent rect. 3 8
875 44.23 humidity 60.0 1440 > th dose independent rect. 5 4
886 44.24 wind 3.0 10 < th dose dependent rect. 2 8
893 44.27 humidity 80.0 1440 > th dose independent rect. 24 7
895 44.27 precipitation 0.1 720 < th dose independent rect. 11 16
901 44.27 precipitation 0.1 720 < th dose dependent rect. 11 16
903 44.27 temperature 10.0 30 > th dose dependent rect. 3 23
911 44.30 humidity 90.0 720 < th dose independent rect. 2 1
912 44.30 humidity 70.0 1440 > th dose independent rect. 5 2
913 44.30 wind 1.0 10 < th dose independent rect. 8 5
914 44.30 humidity 90.0 720 < th dose dependent rect. 2 1
930 44.31 wind 1.0 10 < th dose dependent rect. 8 5
933 44.32 wind 1.0 10 < th dose independent rect. 24 10
943 44.33 wind 1.0 10 < th dose independent rect. 8 2
953 44.34 wind 1.0 10 < th dose independent sin 3 NA
981 44.35 radiation 20.0 10 > th dose dependent rect. 15 19