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Os02g0259600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 50S ribosomal protein L21, chloroplast precursor (CL21) (CS-L7).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 14.1 (0.0261) R2 : 0.714
β1 : -0.883 (0.0953) R2dD : 0.0559 R2D : -0.00239
β2 : 2.01 (0.0638) R2dC : 0.628 R2C : 0.608
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.509 (0.0555) R2dN8 : 0.0707 R2N8 : 0.0315
σ : 0.489
deviance : 109.18
__
_____
C
peak time of C : 21.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.48 0.457 14.1 -0.819 2.01 0.534 0.923 1.13 -0.584 21.6 31.24 1719 -- --
96.2 0.457 14.1 -0.921 1.97 0.585 0.892 -- -0.605 21.7 30.85 1803 -- --
97.44 0.46 14.1 -0.864 2.01 0.54 -- 1.15 -0.578 21.6 30.28 1745 -- --
99.15 0.464 14.1 -0.952 1.99 0.58 -- -- -0.602 21.7 30.27 1787 -- --
151.56 0.573 13.9 -1.16 -- 2.4 -- 0.496 -0.42 -- 1.31 1097 -- --
106.17 0.483 14.1 -0.85 2.02 -- 0.905 -- -0.508 21.5 -- -- -- --
109.18 0.489 14.1 -0.883 2.01 -- -- -- -0.509 21.5 -- -- -- --
139.43 0.55 14 -1.06 -- 2.83 -- -- -0.77 -- 1.56 1114 -- --
120.51 0.511 14.1 -- 2.02 0.592 -- -- -0.493 21.5 39.92 3190 -- --
347.61 0.871 14 -0.87 -- -- -- -- -0.515 -- -- -- -- --
129.73 0.533 14 -- 2.01 -- -- -- -0.411 21.4 -- -- -- --
170.2 0.608 14 -- -- 2.74 -- -- -0.588 -- 1.56 1097 -- --
367.57 0.895 14 -- -- -- -- -- -0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 87.76 radiation 30.0 270 < th dose independent rect. 4 8
6 88.51 radiation 40.0 270 < th dose independent rect. 3 22
7 88.52 atmosphere 1000.0 10 > th dose independent rect. 6 20
11 88.80 temperature 30.0 270 < th dose dependent rect. 5 8
18 89.32 radiation 40.0 270 < th dose dependent rect. 5 7
23 89.56 radiation 40.0 270 < th dose independent rect. 5 18
36 90.13 temperature 30.0 270 < th dose dependent rect. 5 16
48 90.42 atmosphere 1000.0 10 > th dose independent rect. 6 18
61 90.88 temperature 30.0 90 < th dose independent rect. 6 7
71 91.09 atmosphere 995.0 90 > th dose dependent rect. 6 17
81 91.27 temperature 30.0 270 < th dose independent rect. 4 7
93 91.34 atmosphere 995.0 10 > th dose dependent rect. 6 20
95 91.37 temperature 10.0 270 > th dose dependent rect. 23 16
98 91.41 atmosphere 995.0 10 > th dose dependent rect. 6 8
112 91.60 temperature 30.0 270 < th dose dependent sin 1 NA
117 91.68 temperature 25.0 270 < th dose independent rect. 5 16
122 91.76 temperature 30.0 1440 < th dose dependent rect. 10 1
170 92.33 radiation 40.0 270 < th dose dependent rect. 5 18
174 92.38 temperature 25.0 270 > th dose independent rect. 9 8
183 92.46 wind 9.0 10 < th dose dependent rect. 6 7
193 92.52 atmosphere 995.0 270 > th dose dependent rect. 4 18
196 92.55 temperature 10.0 1440 > th dose dependent rect. 9 2
203 92.59 atmosphere 1015.0 1440 < th dose independent rect. 3 4
237 92.80 atmosphere 1000.0 10 > th dose independent rect. 6 8
272 93.04 radiation 30.0 10 < th dose independent rect. 6 20
284 93.11 wind 5.0 10 < th dose independent rect. 6 7
308 93.24 wind 5.0 10 < th dose dependent rect. 2 4
316 93.28 temperature 20.0 90 > th dose independent rect. 5 8
318 93.28 wind 5.0 10 < th dose dependent rect. 24 6
336 93.39 humidity 60.0 14400 > th dose independent rect. 3 4
347 93.42 atmosphere 1015.0 90 < th dose dependent rect. 2 15
371 93.52 wind 7.0 10 < th dose independent rect. 13 17
385 93.57 atmosphere 1015.0 270 < th dose dependent rect. 23 17
395 93.61 atmosphere 1015.0 90 < th dose dependent rect. 11 19
396 93.62 wind 1.0 43200 > th dose independent rect. 13 10
405 93.65 wind 9.0 30 < th dose dependent rect. 13 17
414 93.69 radiation 10.0 90 < th dose dependent sin 7 NA
437 93.77 temperature 25.0 270 < th dose independent sin 23 NA
442 93.78 wind 7.0 270 < th dose independent rect. 11 17
455 93.82 atmosphere 1015.0 10 < th dose dependent rect. 2 15
478 93.90 atmosphere 1000.0 30 > th dose dependent rect. 6 12
488 93.93 humidity 80.0 10 > th dose dependent rect. 2 12
497 93.97 precipitation 0.1 270 < th dose independent rect. 11 17
503 93.97 precipitation 0.1 270 < th dose dependent rect. 11 17
511 93.99 atmosphere 1015.0 10 < th dose dependent rect. 12 18
538 94.11 wind 1.0 43200 > th dose independent rect. 15 8
545 94.12 humidity 60.0 10 > th dose dependent rect. 2 4
562 94.17 radiation 1.0 1440 < th dose dependent rect. 17 14
565 94.18 temperature 30.0 30 < th dose independent rect. 6 20
574 94.22 precipitation 0.1 10 < th dose independent rect. 2 4
575 94.22 radiation 30.0 10 < th dose independent rect. 6 7
577 94.22 precipitation 0.1 10 < th dose dependent rect. 2 4
582 94.23 wind 3.0 10 < th dose independent rect. 2 4
583 94.23 humidity 70.0 43200 > th dose dependent sin 16 NA
596 94.26 atmosphere 1015.0 10 < th dose dependent rect. 2 17
598 94.26 humidity 70.0 43200 > th dose dependent rect. 11 18
622 94.32 radiation 1.0 1440 < th dose dependent rect. 17 18
625 94.33 humidity 70.0 43200 > th dose dependent rect. 12 16
630 94.34 atmosphere 1015.0 10 < th dose dependent rect. 2 4
650 94.37 temperature 15.0 10 > th dose independent rect. 13 17
664 94.39 wind 1.0 43200 > th dose independent rect. 16 5
665 94.39 precipitation 0.1 10 < th dose independent rect. 13 17
666 94.39 wind 7.0 10 < th dose dependent rect. 22 8
668 94.39 precipitation 0.1 10 < th dose dependent rect. 13 17
670 94.40 radiation 1.0 90 > th dose independent sin 5 NA
673 94.40 humidity 70.0 43200 > th dose dependent rect. 13 14
694 94.43 temperature 15.0 10 > th dose independent rect. 6 20
704 94.44 precipitation 0.1 10 < th dose independent rect. 6 7
705 94.44 precipitation 0.1 10 < th dose dependent rect. 6 7
718 94.46 radiation 20.0 14400 < th dose independent rect. 3 3
730 94.48 radiation 10.0 10 < th dose independent rect. 2 4
739 94.49 temperature 10.0 10 > th dose independent rect. 6 7
742 94.49 atmosphere 1015.0 10 < th dose independent rect. 6 7
748 94.49 atmosphere 1015.0 90 < th dose dependent rect. 9 21
749 94.50 humidity 80.0 10 > th dose independent rect. 2 4
773 94.53 radiation 1.0 10 > th dose independent rect. 6 6
782 94.54 radiation 1.0 90 < th dose independent sin 5 NA
784 94.54 temperature 10.0 10 > th dose independent rect. 2 4
786 94.54 temperature 30.0 10 < th dose independent rect. 2 4
787 94.54 humidity 50.0 10 > th dose independent rect. 2 4
790 94.54 atmosphere 995.0 10 > th dose independent rect. 2 4
791 94.54 atmosphere 1010.0 10 < th dose independent rect. 2 4
801 94.55 radiation 1.0 1440 < th dose independent rect. 17 14
802 94.55 temperature 15.0 270 > th dose independent rect. 11 17
854 94.62 temperature 20.0 270 > th dose dependent rect. 8 8
874 94.64 wind 3.0 10 < th dose independent rect. 24 6
875 94.64 temperature 10.0 10 > th dose dependent rect. 2 4
886 94.66 wind 5.0 90 < th dose independent rect. 23 7
896 94.67 temperature 15.0 270 > th dose independent rect. 3 22
911 94.69 precipitation 0.1 43200 > th dose dependent rect. 14 4
920 94.70 wind 9.0 10 < th dose independent rect. 6 20
927 94.71 wind 5.0 270 < th dose independent rect. 23 5
942 94.72 temperature 10.0 1440 > th dose independent rect. 7 7
945 94.72 atmosphere 995.0 1440 > th dose independent rect. 7 7
946 94.72 temperature 10.0 1440 > th dose independent rect. 14 17
957 94.73 humidity 70.0 43200 > th dose dependent rect. 17 23
969 94.76 humidity 90.0 30 > th dose independent rect. 2 12
974 94.76 radiation 30.0 10 < th dose independent rect. 6 18
975 94.76 humidity 70.0 43200 > th dose dependent no NA NA
976 94.76 radiation 40.0 10 < th dose dependent rect. 2 4
1000 94.77 wind 1.0 43200 < th dose dependent rect. 13 8