Os02g0257400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0257400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 192.05 | 0.651 | 13.4 | -1.88 | 0.481 | -0.635 | -0.0573 | -4.87 | -1.43 | 9.32 | 29.2 | 3749 | -- | -- |
| 194.51 | 0.65 | 13.5 | -2.91 | 0.429 | -0.897 | -0.466 | -- | -1.8 | 9.66 | 28.72 | 5753 | -- | -- |
| 191.97 | 0.645 | 13.4 | -1.88 | 0.483 | -0.643 | -- | -4.89 | -1.43 | 9.25 | 29.2 | 3689 | -- | -- |
| 184.89 | 0.633 | 13.6 | -3.02 | 0.398 | -1.16 | -- | -- | -2.08 | 7.83 | 28.4 | 12269 | -- | -- |
| 204.34 | 0.666 | 13.3 | -1.77 | -- | -0.529 | -- | -4.86 | -1.4 | -- | 29 | 4315 | -- | -- |
| 236.78 | 0.721 | 13.5 | -2.6 | 0.419 | -- | -0.136 | -- | -1.61 | 8.62 | -- | -- | -- | -- |
| 236.83 | 0.721 | 13.5 | -2.61 | 0.421 | -- | -- | -- | -1.61 | 8.5 | -- | -- | -- | -- |
| 182.45 | 0.629 | 13.6 | -3.26 | -- | -1.52 | -- | -- | -2.29 | -- | 30.4 | 18957 | -- | -- |
| 407.02 | 0.94 | 13.4 | -- | 0.452 | -0.544 | -- | -- | -1.32 | 9.25 | 29.27 | 3482 | -- | -- |
| 246.75 | 0.734 | 13.5 | -2.61 | -- | -- | -- | -- | -1.61 | -- | -- | -- | -- | -- |
| 416.13 | 0.954 | 13.4 | -- | 0.414 | -- | -- | -- | -1.32 | 8.97 | -- | -- | -- | -- |
| 417.98 | 0.952 | 13.4 | -- | -- | -0.459 | -- | -- | -1.23 | -- | 30.9 | 4309 | -- | -- |
| 425.95 | 0.963 | 13.4 | -- | -- | -- | -- | -- | -1.32 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 172.52 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 2 | 172.52 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 2 |
| 3 | 172.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 4 | 172.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 37 | 176.35 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 46 | 176.74 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 49 | 176.90 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 14 |
| 54 | 176.94 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 7 | 11 |
| 62 | 177.12 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 15 |
| 68 | 177.19 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 70 | 177.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 16 | 7 |
| 71 | 177.20 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 9 |
| 85 | 177.42 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 87 | 177.46 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 94 | 177.53 | humidity | 80.0 | 14400 | > th | dose independent | sin | 16 | NA |
| 123 | 177.84 | humidity | 80.0 | 14400 | < th | dose independent | sin | 16 | NA |
| 135 | 177.98 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 144 | 178.05 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 158 | 178.17 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 219 | 178.82 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 255 | 179.16 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 265 | 179.30 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 273 | 179.38 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 14 |
| 323 | 179.80 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 21 | NA |
| 332 | 179.85 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 359 | 179.96 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 400 | 180.19 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 407 | 180.22 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 409 | 180.23 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 437 | 180.38 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 455 | 180.51 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 8 | NA |
| 542 | 180.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 552 | 180.93 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 15 |
| 565 | 180.98 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 571 | 181.00 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 580 | 181.05 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 581 | 181.05 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 593 | 181.09 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 599 | 181.11 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 13 | 17 |
| 608 | 181.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 672 | 181.35 | humidity | 60.0 | 14400 | > th | dose dependent | sin | 15 | NA |
| 818 | 181.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 822 | 181.65 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 2 | 13 |
| 823 | 181.65 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 825 | 181.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 836 | 181.66 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 18 |
| 902 | 181.76 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 929 | 181.82 | temperature | 30.0 | 14400 | < th | dose independent | sin | 5 | NA |
| 935 | 181.82 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 21 |