Os02g0256500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0256500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.63 | 0.557 | 5.56 | 0.651 | 0.276 | 1.67 | 0.191 | -0.521 | -0.333 | 11.5 | 23.94 | 663 | -- | -- |
| 140.42 | 0.552 | 5.57 | 0.573 | 0.333 | 1.8 | 0.00242 | -- | -0.36 | 12.2 | 23.54 | 546 | -- | -- |
| 140.33 | 0.552 | 5.56 | 0.621 | 0.326 | 1.74 | -- | -0.311 | -0.348 | 12.1 | 23.68 | 551 | -- | -- |
| 140.42 | 0.552 | 5.57 | 0.572 | 0.33 | 1.8 | -- | -- | -0.361 | 12.2 | 23.53 | 546 | -- | -- |
| 144.62 | 0.56 | 5.55 | 0.664 | -- | 1.75 | -- | -0.492 | -0.285 | -- | 25 | 736 | -- | -- |
| 183.25 | 0.635 | 5.63 | 0.11 | 0.45 | -- | 0.0841 | -- | -0.668 | 10.9 | -- | -- | -- | -- |
| 183.28 | 0.634 | 5.63 | 0.114 | 0.45 | -- | -- | -- | -0.667 | 11 | -- | -- | -- | -- |
| 145.03 | 0.561 | 5.56 | 0.609 | -- | 1.79 | -- | -- | -0.303 | -- | 24.82 | 726 | -- | -- |
| 148.04 | 0.567 | 5.59 | -- | 0.351 | 1.54 | -- | -- | -0.46 | 12 | 23.6 | 520 | -- | -- |
| 195.86 | 0.654 | 5.65 | 0.104 | -- | -- | -- | -- | -0.67 | -- | -- | -- | -- | -- |
| 183.63 | 0.634 | 5.64 | -- | 0.449 | -- | -- | -- | -0.68 | 11 | -- | -- | -- | -- |
| 153.64 | 0.577 | 5.59 | -- | -- | 1.54 | -- | -- | -0.412 | -- | 24.9 | 713 | -- | -- |
| 196.14 | 0.654 | 5.65 | -- | -- | -- | -- | -- | -0.682 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 138.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 5 | 138.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 15 | 139.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 16 | 139.45 | temperature | 10 | 720 | > th | dose dependent | sin | 10 | NA |
| 28 | 139.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 42 | 140.21 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 108 | 141.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 116 | 141.20 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 118 | 141.23 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 129 | 141.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 142 | 141.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 177 | 141.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 237 | 142.54 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 269 | 142.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 280 | 142.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 347 | 143.22 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 412 | 143.50 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 460 | 143.65 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 808 | 144.45 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 824 | 144.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 953 | 144.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |