Os02g0255100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0255100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein phosphatase 2C family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.52 | 0.35 | 8.14 | -2.43 | 1.38 | 1.25 | -0.0108 | -2.5 | -0.646 | 7.03 | 25.4 | 406 | -- | -- |
| 57.12 | 0.352 | 8.11 | -2.14 | 1.39 | 1.09 | 0.283 | -- | -0.59 | 7.01 | 25.2 | 401 | -- | -- |
| 55.52 | 0.347 | 8.14 | -2.43 | 1.38 | 1.25 | -- | -2.49 | -0.644 | 7.03 | 25.42 | 404 | -- | -- |
| 57.09 | 0.352 | 8.1 | -2.11 | 1.34 | 0.983 | -- | -- | -0.569 | 7.19 | 25.3 | 459 | -- | -- |
| 105.5 | 0.478 | 8.2 | -2.72 | -- | 0.796 | -- | -1.83 | -0.757 | -- | 23.91 | 1416 | -- | -- |
| 74.38 | 0.404 | 8.1 | -1.94 | 0.923 | -- | -0.0328 | -- | -0.502 | 7.74 | -- | -- | -- | -- |
| 74.39 | 0.404 | 8.1 | -1.94 | 0.923 | -- | -- | -- | -0.502 | 7.75 | -- | -- | -- | -- |
| 104.93 | 0.477 | 8.11 | -2.16 | -- | 0.716 | -- | -- | -0.475 | -- | 26.19 | 4366 | -- | -- |
| 169.06 | 0.606 | 8.04 | -- | 1.08 | 0.501 | -- | -- | -0.285 | 7.47 | 26.6 | 379 | -- | -- |
| 120.37 | 0.513 | 8.12 | -1.93 | -- | -- | -- | -- | -0.488 | -- | -- | -- | -- | -- |
| 173.65 | 0.616 | 8.05 | -- | 0.909 | -- | -- | -- | -0.285 | 7.89 | -- | -- | -- | -- |
| 213.49 | 0.681 | 8.08 | -- | -- | 0.258 | -- | -- | -0.294 | -- | 34.1 | 7276 | -- | -- |
| 218.54 | 0.69 | 8.07 | -- | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 55.42 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 2 | 55.52 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 12 |
| 3 | 55.62 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 18 | 55.63 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 41 | 55.70 | temperature | 25 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 50 | 55.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 51 | 55.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 53 | 55.81 | temperature | 25 | 270 | > th | dose dependent | sin | 21 | NA |
| 63 | 55.85 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 8 |
| 68 | 55.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 70 | 55.88 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 88 | 55.96 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 90 | 55.98 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 103 | 56.04 | temperature | 30 | 1440 | < th | dose independent | sin | 9 | NA |
| 170 | 56.10 | temperature | 25 | 90 | > th | dose dependent | sin | 18 | NA |
| 198 | 56.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 211 | 56.33 | temperature | 30 | 1440 | > th | dose independent | sin | 9 | NA |
| 247 | 56.37 | temperature | 25 | 90 | > th | dose dependent | rect. | 12 | 17 |
| 376 | 56.60 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 511 | 56.82 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |