Os02g0254600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0254600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.04 | 0.611 | 13 | -0.739 | 0.9 | 0.772 | -1.5 | 1.99 | 0.0326 | 16.3 | 29.4 | 1550 | -- | -- |
| 170.75 | 0.609 | 13 | -0.268 | 0.936 | 1.01 | -1.42 | -- | 0.0335 | 16.3 | 29.54 | 1611 | -- | -- |
| 174.75 | 0.616 | 13 | -0.751 | 0.9 | 0.797 | -- | 2.03 | 0.0249 | 16.4 | 29.4 | 1624 | -- | -- |
| 175.66 | 0.617 | 13 | -0.241 | 0.953 | 1.05 | -- | -- | 0.124 | 16.4 | 29.5 | 1657 | -- | -- |
| 215.98 | 0.684 | 13.1 | -0.78 | -- | 0.784 | -- | 2.04 | -0.0342 | -- | 29.24 | 5676 | -- | -- |
| 212.52 | 0.683 | 13 | -0.541 | 0.92 | -- | -1.35 | -- | 0.0725 | 16.2 | -- | -- | -- | -- |
| 217.59 | 0.691 | 13 | -0.554 | 0.912 | -- | -- | -- | 0.0651 | 16.2 | -- | -- | -- | -- |
| 217.65 | 0.687 | 13 | -0.268 | -- | 0.975 | -- | -- | 0.031 | -- | 29.5 | 5604 | -- | -- |
| 177.27 | 0.62 | 13 | -- | 0.958 | 1.07 | -- | -- | 0.148 | 16.4 | 29.47 | 1633 | -- | -- |
| 262.52 | 0.757 | 13 | -0.591 | -- | -- | -- | -- | 0.0409 | -- | -- | -- | -- | -- |
| 225.69 | 0.703 | 13 | -- | 0.922 | -- | -- | -- | 0.127 | 16.2 | -- | -- | -- | -- |
| 218.94 | 0.689 | 13 | -- | -- | 1.11 | -- | -- | 0.166 | -- | 28.7 | 5614 | -- | -- |
| 271.74 | 0.769 | 13 | -- | -- | -- | -- | -- | 0.106 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.84 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 5 | 158.54 | temperature | 20 | 14400 | > th | dose independent | rect. | 11 | 15 |
| 7 | 158.61 | temperature | 20 | 14400 | > th | dose independent | sin | 17 | NA |
| 41 | 159.32 | temperature | 25 | 14400 | < th | dose dependent | rect. | 10 | 12 |
| 43 | 159.35 | temperature | 20 | 14400 | < th | dose independent | rect. | 11 | 15 |
| 49 | 159.43 | temperature | 20 | 14400 | < th | dose independent | sin | 17 | NA |
| 63 | 159.53 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 108 | 159.84 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 119 | 159.91 | temperature | 25 | 14400 | < th | dose dependent | sin | 20 | NA |
| 147 | 160.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 194 | 160.43 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 217 | 160.55 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 339 | 161.29 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 369 | 161.44 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 383 | 161.47 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 385 | 161.47 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 23 |
| 431 | 161.60 | temperature | 20 | 14400 | < th | dose dependent | rect. | 21 | 2 |
| 458 | 161.71 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 538 | 162.10 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 572 | 162.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 23 |
| 575 | 162.25 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 583 | 162.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 18 | 23 |
| 585 | 162.27 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 16 |
| 604 | 162.32 | wind | 5 | 14400 | > th | dose dependent | rect. | 6 | 3 |
| 725 | 162.81 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 20 |
| 796 | 163.24 | temperature | 25 | 14400 | < th | dose dependent | no | NA | NA |
| 798 | 163.27 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 20 |
| 801 | 163.27 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 813 | 163.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 819 | 163.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 831 | 163.45 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 835 | 163.46 | temperature | 25 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 852 | 163.54 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 874 | 163.66 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 880 | 163.69 | wind | 5 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 890 | 163.74 | wind | 9 | 43200 | > th | dose independent | sin | 10 | NA |
| 897 | 163.77 | wind | 5 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 898 | 163.77 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 930 | 163.96 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 22 |
| 935 | 163.99 | wind | 5 | 14400 | > th | dose independent | rect. | 24 | 11 |
| 970 | 164.21 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 978 | 164.25 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 990 | 164.35 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 11 |
| 996 | 164.38 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 1 |