FiT-DB / Search/ Help/ Sample detail

Os02g0253800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.5 (0.0358) R2 : 0.587
β1 : -1.9 (0.129) R2dD : 0.208 R2D : 0.0593
β2 : 0.97 (0.0873) R2dC : 0.115 R2C : 0.0373
β3 : -2.04 (0.155) R2dE : 0.182 R2E : -0.0377
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.3 (0.0805) R2dN8 : 0.377 R2N8 : 0.0338
σ : 0.658
deviance : 199.64
__
_____
C
peak time of C : 21
E
wheather : humidity
threshold : 91.7
memory length : 6904
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.12
open length of G : 3.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.34 0.657 9.49 -1.63 0.925 -2.3 -0.614 -2.18 -1.24 21.3 92 5968 6.18 2.66
202.06 0.662 9.48 -1.72 0.888 -2.19 -0.399 -- -1.23 21.3 91.76 6071 6.05 3.7
195.61 0.651 9.5 -1.53 0.929 -2.28 -- -2.33 -1.25 21.3 92 5948 6.04 3.38
199.64 0.658 9.5 -1.9 0.97 -2.04 -- -- -1.3 21 91.7 6904 6.12 3.63
242.44 0.725 9.49 -1.4 -- -2.25 -- -1.91 -1.29 -- 91.56 6215 5.68 4.02
275.21 0.778 9.42 -2.03 1 -- -0.423 -- -0.95 21.5 -- -- -- --
275.86 0.778 9.42 -2.01 1 -- -- -- -0.949 21.4 -- -- -- --
247.06 0.732 9.47 -1.56 -- -2.21 -- -- -1.29 -- 91.59 6230 5.3 4.68
255.58 0.745 9.51 -- 0.897 -2.79 -- -- -1.17 21 90.08 6950 5.18 3.58
334.88 0.855 9.39 -2 -- -- -- -- -0.952 -- -- -- -- --
382.4 0.915 9.37 -- 1 -- -- -- -0.725 21.3 -- -- -- --
289.51 0.792 9.47 -- -- -3.1 -- -- -1.28 -- 88.91 7694 4.68 3.93
440.84 0.98 9.34 -- -- -- -- -- -0.73 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.90 humidity 90.0 14400 > th dose dependent rect. 6 2
2 207.83 humidity 90.0 14400 > th dose dependent rect. 6 4
4 208.44 humidity 80.0 14400 > th dose independent rect. 13 8
11 209.30 humidity 80.0 14400 < th dose independent rect. 14 6
12 209.32 humidity 80.0 14400 > th dose dependent rect. 13 12
18 209.48 humidity 80.0 14400 > th dose dependent rect. 17 8
21 209.50 humidity 80.0 14400 > th dose independent rect. 8 13
23 209.54 humidity 80.0 14400 > th dose dependent rect. 18 6
27 209.58 humidity 80.0 14400 > th dose dependent rect. 20 1
36 209.76 humidity 80.0 14400 > th dose dependent sin 17 NA
48 209.92 humidity 80.0 14400 < th dose independent rect. 8 12
52 209.96 humidity 90.0 14400 > th dose dependent rect. 5 21
74 210.22 humidity 80.0 14400 > th dose independent sin 20 NA
83 210.30 humidity 80.0 14400 < th dose independent rect. 11 9
156 210.80 humidity 70.0 14400 > th dose dependent rect. 14 5
216 211.09 humidity 80.0 14400 < th dose independent sin 21 NA
242 211.18 humidity 80.0 14400 > th dose dependent rect. 13 22
244 211.19 humidity 80.0 14400 > th dose dependent rect. 1 22
287 211.32 humidity 90.0 14400 > th dose dependent rect. 5 11
366 211.61 humidity 80.0 14400 > th dose dependent rect. 17 22
403 211.75 humidity 80.0 14400 > th dose dependent no NA NA
491 212.08 humidity 70.0 14400 > th dose dependent rect. 21 22
677 212.62 humidity 70.0 14400 > th dose dependent rect. 14 1
754 212.90 humidity 90.0 14400 > th dose independent rect. 17 9
842 213.20 humidity 90.0 14400 > th dose independent sin 16 NA
849 213.22 humidity 80.0 14400 < th dose independent rect. 8 7
965 213.67 humidity 80.0 14400 > th dose independent rect. 8 4
969 213.68 humidity 90.0 14400 > th dose dependent sin 1 NA
970 213.68 precipitation 0.1 43200 > th dose dependent rect. 17 3