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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0253000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0378) R2 : 0.398
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.62 (0.0967) R2dC : 0.371 R2C : 0.355
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.402 (0.0796) R2dN8 : 0.0435 R2N8 : 0.0274
σ : 0.713
deviance : 232.57
__
_____
C
peak time of C : 4.02
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.89 0.686 3.94 -0.525 1.8 -0.805 0.116 1.31 -0.497 4.91 80.27 797 -- --
216.31 0.685 3.93 -0.421 1.78 -0.806 0.325 -- -0.478 4.91 80.7 816 -- --
212.92 0.68 3.94 -0.527 1.8 -0.801 -- 1.33 -0.497 4.9 80.47 796 -- --
216.57 0.685 3.93 -0.422 1.78 -0.787 -- -- -0.48 4.87 80.32 816 -- --
313.24 0.829 3.94 -0.299 -- 0.723 -- -0.029 -0.406 -- 80.47 796 -- --
228.57 0.709 3.93 -0.39 1.63 -- -0.055 -- -0.446 4.01 -- -- -- --
228.58 0.708 3.93 -0.389 1.63 -- -- -- -0.445 4.02 -- -- -- --
312.21 0.827 3.94 -0.299 -- 0.732 -- -- -0.39 -- 79.09 1899 -- --
221.21 0.693 3.92 -- 1.74 -0.768 -- -- -0.434 4.85 80.86 840 -- --
372.88 0.902 3.94 -0.323 -- -- -- -- -0.402 -- -- -- -- --
232.57 0.713 3.92 -- 1.62 -- -- -- -0.402 4.02 -- -- -- --
314.57 0.829 3.93 -- -- 0.734 -- -- -0.357 -- 79.09 1899 -- --
375.63 0.905 3.93 -- -- -- -- -- -0.366 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 199.26 wind 5.0 90 < th dose independent rect. 1 5
2 199.34 atmosphere 1015.0 1440 < th dose independent rect. 2 5
3 200.06 wind 5.0 270 < th dose independent rect. 1 2
4 200.57 precipitation 0.1 90 < th dose independent rect. 1 5
5 200.57 precipitation 0.1 90 < th dose dependent rect. 1 5
6 200.78 wind 7.0 90 < th dose independent rect. 6 19
7 200.92 wind 9.0 90 < th dose dependent rect. 1 5
10 201.16 radiation 10.0 90 < th dose independent rect. 1 5
14 201.49 wind 7.0 270 < th dose independent rect. 15 9
15 201.51 wind 9.0 270 < th dose independent rect. 3 22
17 201.52 temperature 10.0 90 > th dose independent rect. 1 5
19 201.52 temperature 30.0 90 < th dose independent rect. 1 5
20 201.52 humidity 50.0 90 > th dose independent rect. 1 5
23 201.52 atmosphere 995.0 90 > th dose independent rect. 1 5
24 201.52 atmosphere 1010.0 90 < th dose independent rect. 1 5
29 201.52 temperature 10.0 90 > th dose independent rect. 6 19
30 201.55 temperature 15.0 90 > th dose independent rect. 11 19
31 201.62 radiation 40.0 90 < th dose dependent rect. 1 5
34 201.83 wind 1.0 270 > th dose independent rect. 1 2
35 201.83 humidity 60.0 14400 > th dose independent rect. 2 5
41 202.04 atmosphere 1015.0 90 < th dose independent rect. 6 19
42 202.05 wind 5.0 270 < th dose independent rect. 23 6
44 202.11 atmosphere 995.0 90 > th dose independent rect. 6 19
45 202.17 wind 9.0 90 < th dose dependent rect. 6 19
48 202.23 wind 9.0 270 < th dose dependent rect. 1 2
51 202.35 precipitation 0.1 270 < th dose independent rect. 1 2
52 202.35 radiation 30.0 1440 < th dose independent rect. 2 5
53 202.35 precipitation 0.1 270 < th dose dependent rect. 1 2
54 202.40 wind 5.0 10 < th dose independent rect. 3 3
63 202.58 temperature 10.0 270 > th dose independent rect. 1 2
65 202.58 temperature 30.0 270 < th dose independent rect. 1 2
66 202.58 humidity 50.0 270 > th dose independent rect. 1 2
69 202.58 atmosphere 995.0 270 > th dose independent rect. 1 2
70 202.58 atmosphere 1010.0 270 < th dose independent rect. 1 2
72 202.58 radiation 1.0 270 < th dose independent rect. 1 2
77 202.58 temperature 10.0 270 > th dose independent rect. 3 22
78 202.58 radiation 1.0 270 < th dose dependent rect. 1 2
84 202.61 precipitation 0.1 90 < th dose independent rect. 11 19
85 202.61 precipitation 0.1 90 < th dose dependent rect. 11 19
93 202.81 wind 9.0 1440 < th dose independent rect. 2 5
94 202.81 temperature 10.0 1440 > th dose independent rect. 2 5
97 202.81 temperature 30.0 1440 < th dose independent rect. 2 5
101 202.81 humidity 50.0 1440 > th dose independent rect. 2 5
106 202.81 atmosphere 995.0 1440 > th dose independent rect. 2 5
111 202.81 temperature 10.0 1440 > th dose independent rect. 7 19
115 202.87 precipitation 0.1 10 < th dose independent rect. 3 3
116 202.87 precipitation 0.1 10 < th dose dependent rect. 3 3
120 202.95 temperature 15.0 90 > th dose independent rect. 6 5
142 203.05 radiation 10.0 10 < th dose independent rect. 3 3
149 203.13 radiation 1.0 90 > th dose independent rect. 6 5
159 203.34 precipitation 0.1 90 < th dose independent rect. 6 5
160 203.34 precipitation 0.1 90 < th dose dependent rect. 6 5
161 203.36 wind 7.0 30 < th dose dependent rect. 3 3
168 203.40 wind 9.0 90 < th dose independent rect. 6 5
177 203.40 atmosphere 995.0 90 > th dose independent rect. 6 5
180 203.40 atmosphere 1015.0 90 < th dose independent rect. 6 5
198 203.67 humidity 50.0 90 > th dose independent rect. 6 5
204 203.73 wind 1.0 270 > th dose independent rect. 10 18
209 203.76 wind 9.0 10 < th dose independent rect. 6 21
233 203.81 precipitation 0.1 10 < th dose independent rect. 6 19
235 203.81 precipitation 0.1 10 < th dose dependent rect. 6 19
243 203.93 temperature 15.0 270 > th dose independent rect. 23 6
248 203.98 temperature 15.0 30 > th dose independent rect. 6 21
253 204.05 precipitation 0.1 90 < th dose independent rect. 6 19
256 204.05 precipitation 0.1 90 < th dose dependent rect. 6 19
259 204.08 temperature 10.0 30 > th dose independent rect. 3 3
261 204.08 temperature 30.0 30 < th dose independent rect. 3 3
262 204.08 humidity 50.0 30 > th dose independent rect. 3 3
265 204.08 atmosphere 995.0 30 > th dose independent rect. 3 3
266 204.08 atmosphere 1010.0 30 < th dose independent rect. 3 3
305 204.14 precipitation 0.1 270 < th dose independent rect. 23 6
307 204.14 precipitation 0.1 270 < th dose dependent rect. 23 6
309 204.17 temperature 10.0 90 > th dose dependent rect. 1 5
311 204.21 wind 1.0 270 > th dose independent rect. 23 6
313 204.21 atmosphere 995.0 30 > th dose independent rect. 6 21
314 204.21 precipitation 0.1 270 < th dose independent rect. 8 22
316 204.21 precipitation 0.1 270 < th dose dependent rect. 8 22
332 204.40 humidity 50.0 90 > th dose dependent rect. 1 5
337 204.45 radiation 1.0 270 < th dose dependent sin 9 NA
338 204.45 radiation 40.0 30 < th dose dependent rect. 3 3
340 204.47 wind 9.0 90 < th dose independent rect. 11 19
352 204.55 temperature 30.0 270 < th dose independent rect. 23 6
353 204.55 humidity 50.0 270 > th dose independent rect. 23 6
356 204.55 atmosphere 995.0 270 > th dose independent rect. 23 6
358 204.55 radiation 20.0 270 < th dose independent rect. 23 6
362 204.55 temperature 10.0 90 > th dose dependent rect. 6 5
363 204.55 radiation 40.0 270 < th dose dependent rect. 23 6
364 204.56 radiation 1.0 270 < th dose independent rect. 23 6
366 204.56 radiation 20.0 270 < th dose dependent rect. 23 6
369 204.58 precipitation 0.1 270 < th dose independent rect. 24 15
370 204.58 precipitation 0.1 270 < th dose dependent rect. 24 15
391 204.65 temperature 15.0 10 > th dose independent rect. 12 18
394 204.69 radiation 40.0 270 < th dose independent rect. 15 9
396 204.69 wind 9.0 270 < th dose dependent rect. 15 9
403 204.77 precipitation 0.1 10 < th dose independent rect. 6 21
404 204.77 precipitation 0.1 10 < th dose dependent rect. 6 21
423 204.81 humidity 50.0 270 > th dose dependent rect. 1 2
426 204.83 atmosphere 1015.0 90 < th dose dependent rect. 1 5
427 204.85 temperature 10.0 270 > th dose independent rect. 15 9
428 204.85 temperature 10.0 270 > th dose independent rect. 24 15
431 204.85 temperature 10.0 30 > th dose dependent rect. 6 19
432 204.87 atmosphere 1015.0 270 < th dose independent rect. 24 15
486 205.17 precipitation 0.1 270 < th dose independent rect. 6 2
487 205.17 precipitation 0.1 270 < th dose dependent rect. 6 2
489 205.19 wind 9.0 270 < th dose independent rect. 24 15
490 205.20 wind 9.0 270 < th dose independent rect. 6 2
491 205.20 temperature 10.0 270 > th dose independent rect. 6 2
493 205.20 temperature 30.0 270 < th dose independent rect. 6 2
494 205.20 humidity 50.0 270 > th dose independent rect. 6 2
496 205.20 atmosphere 995.0 270 > th dose independent rect. 6 2
497 205.20 atmosphere 1015.0 270 < th dose independent rect. 6 2
500 205.20 temperature 10.0 270 > th dose independent rect. 8 22
508 205.25 temperature 10.0 30 > th dose dependent rect. 3 3
545 205.34 temperature 15.0 270 > th dose independent rect. 11 17
551 205.39 wind 1.0 90 > th dose independent rect. 6 5
562 205.45 temperature 10.0 270 > th dose dependent rect. 1 2
569 205.52 atmosphere 995.0 270 > th dose independent rect. 24 15
585 205.53 wind 9.0 90 < th dose dependent rect. 6 5
586 205.54 radiation 40.0 270 < th dose independent rect. 6 2
592 205.57 temperature 30.0 270 < th dose dependent rect. 1 2
593 205.59 radiation 10.0 90 < th dose dependent rect. 1 12
598 205.62 atmosphere 1015.0 270 < th dose dependent rect. 1 2
635 205.78 radiation 1.0 270 < th dose independent sin 9 NA
646 205.85 temperature 10.0 270 > th dose dependent rect. 6 2
698 206.13 humidity 80.0 720 < th dose independent rect. 17 4
708 206.20 humidity 50.0 30 > th dose dependent rect. 3 3
709 206.20 humidity 50.0 720 > th dose dependent rect. 19 6
714 206.23 temperature 30.0 90 < th dose independent rect. 6 5
716 206.23 radiation 1.0 270 < th dose dependent rect. 23 14
720 206.25 temperature 30.0 90 < th dose dependent rect. 1 5
722 206.27 radiation 10.0 90 < th dose dependent rect. 1 14
729 206.30 humidity 50.0 270 > th dose dependent rect. 6 2
741 206.34 atmosphere 1015.0 270 < th dose independent rect. 4 21
777 206.41 precipitation 0.1 10 < th dose independent rect. 12 18
784 206.41 precipitation 0.1 10 < th dose dependent rect. 12 18
786 206.42 temperature 15.0 270 > th dose independent rect. 4 7
790 206.44 atmosphere 995.0 90 > th dose independent rect. 11 19
820 206.50 temperature 10.0 10 > th dose dependent rect. 6 21
833 206.57 atmosphere 995.0 270 > th dose independent rect. 15 9
844 206.60 radiation 10.0 90 < th dose dependent rect. 1 16
853 206.67 radiation 10.0 90 < th dose dependent sin 5 NA
854 206.67 wind 9.0 270 < th dose dependent rect. 6 2
875 206.78 atmosphere 995.0 270 > th dose independent rect. 4 21
896 206.89 precipitation 0.1 270 < th dose independent rect. 4 21
897 206.89 precipitation 0.1 270 < th dose dependent rect. 4 21
902 206.91 atmosphere 995.0 10 > th dose dependent rect. 3 3
905 206.92 radiation 1.0 90 < th dose independent rect. 1 16
907 206.93 wind 9.0 10 < th dose independent rect. 6 6
918 206.98 radiation 1.0 270 > th dose independent rect. 6 2
919 206.98 atmosphere 1015.0 270 < th dose independent rect. 15 9
923 207.01 humidity 80.0 720 < th dose independent rect. 17 7
932 207.03 precipitation 0.1 270 < th dose independent rect. 15 9
935 207.03 precipitation 0.1 270 < th dose dependent rect. 15 9
942 207.05 temperature 20.0 270 > th dose independent rect. 17 7
947 207.07 radiation 1.0 90 > th dose independent sin 4 NA
957 207.10 humidity 80.0 720 > th dose dependent rect. 22 1
963 207.12 radiation 1.0 90 < th dose independent sin 4 NA
972 207.15 radiation 40.0 90 < th dose independent rect. 11 19
977 207.18 temperature 10.0 10 > th dose dependent rect. 6 6
989 207.24 atmosphere 1015.0 90 < th dose dependent rect. 6 5