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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0252200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GRAB2 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0132) R2 : 0.00285
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0316 (0.0277) R2dN8 : 0.00368 R2N8 : 0.00285
σ : 0.248
deviance : 28.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.34 0.222 2.96 0.0525 0.094 1.79 -0.0174 3.83 -0.0177 10 17.7 735 -- --
26.02 0.238 2.93 0.101 0.105 0.257 0.315 -- 0.00155 11.9 22.69 651 -- --
21.85 0.218 2.97 0.0665 0.102 2.72 -- 5.71 -0.0215 10.1 16.9 558 -- --
26.35 0.239 2.93 0.113 0.107 0.243 -- -- 0.0107 11.3 22.71 695 -- --
22.46 0.221 2.97 0.0748 -- 2.77 -- 5.77 -0.0199 -- 17.02 556 -- --
26.74 0.242 2.94 0.0435 0.134 -- 0.266 -- -0.0257 11.5 -- -- -- --
27.02 0.243 2.94 0.0536 0.135 -- -- -- -0.0251 10.8 -- -- -- --
27.04 0.242 2.93 0.126 -- 0.264 -- -- 0.0293 -- 25 785 -- --
26.64 0.24 2.93 -- 0.116 0.18 -- -- -0.00839 10.9 22.9 695 -- --
28.15 0.248 2.94 0.0508 -- -- -- -- -0.026 -- -- -- -- --
27.09 0.243 2.94 -- 0.135 -- -- -- -0.0311 10.8 -- -- -- --
27.41 0.244 2.93 -- -- 0.21 -- -- 0.00645 -- 25.24 777 -- --
28.22 0.248 2.94 -- -- -- -- -- -0.0316 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 21.80 temperature 20 1440 < th dose independent rect. 12 2
2 21.82 wind 9 4320 > th dose independent rect. 3 1
36 21.82 wind 9 4320 > th dose dependent rect. 3 1
52 21.82 temperature 20 1440 < th dose dependent rect. 12 2
74 21.91 temperature 20 1440 < th dose independent rect. 12 6
80 21.97 temperature 20 1440 > th dose independent rect. 17 1
81 21.97 temperature 20 1440 < th dose independent rect. 17 1
82 21.97 temperature 20 1440 > th dose independent rect. 15 3
84 21.97 temperature 20 1440 > th dose independent rect. 12 6
85 21.97 temperature 20 1440 < th dose dependent rect. 19 1
92 22.00 temperature 20 1440 > th dose independent rect. 11 2
93 22.00 temperature 20 720 < th dose independent rect. 7 2
98 22.03 temperature 20 720 < th dose dependent rect. 7 1
109 22.12 temperature 20 1440 < th dose dependent rect. 17 3
114 22.13 temperature 20 1440 < th dose dependent rect. 12 8
121 22.17 humidity 90 1440 > th dose independent rect. 12 1
123 22.19 humidity 90 1440 > th dose dependent rect. 12 1
142 22.31 humidity 90 1440 < th dose independent rect. 12 1
158 22.45 wind 1 270 < th dose dependent rect. 8 1
181 22.57 temperature 20 1440 < th dose dependent rect. 7 16
185 22.60 temperature 20 720 > th dose independent rect. 7 8
187 22.60 temperature 20 1440 < th dose dependent rect. 22 1
238 22.85 temperature 20 1440 < th dose dependent sin 20 NA
312 23.03 temperature 20 720 < th dose dependent rect. 24 1
362 23.31 wind 1 270 < th dose independent rect. 7 2
386 23.42 temperature 20 720 < th dose dependent rect. 24 3
390 23.43 temperature 20 720 < th dose dependent rect. 24 8
401 23.44 temperature 20 720 < th dose dependent rect. 24 15
458 23.50 wind 9 4320 < th dose independent rect. 5 4
459 23.50 temperature 20 720 < th dose dependent sin 0 NA
479 23.52 wind 9 4320 < th dose independent rect. 5 1
491 23.54 temperature 20 720 < th dose dependent rect. 6 22
577 23.61 temperature 20 720 < th dose dependent no NA NA
578 23.61 wind 3 10 < th dose dependent rect. 12 1
676 23.67 wind 9 4320 < th dose independent rect. 23 10
711 23.73 temperature 20 1440 > th dose independent rect. 7 2
764 23.78 wind 9 43200 > th dose independent rect. 3 4
765 23.78 wind 9 43200 > th dose independent rect. 1 6
783 23.80 wind 9 43200 < th dose independent rect. 3 4
794 23.81 radiation 1 4320 < th dose dependent rect. 21 1
796 23.81 wind 9 43200 > th dose dependent rect. 1 6
802 23.82 wind 9 43200 > th dose dependent rect. 3 4
827 23.84 wind 9 43200 < th dose independent rect. 1 6
840 23.85 wind 9 4320 < th dose independent rect. 23 7
846 23.85 wind 5 4320 > th dose dependent rect. 1 7
866 23.86 radiation 1 43200 < th dose dependent rect. 21 1
913 23.90 wind 1 4320 < th dose independent rect. 15 1
915 23.90 wind 9 4320 > th dose independent rect. 22 7
916 23.90 wind 9 4320 > th dose independent rect. 21 9
929 23.90 wind 9 4320 > th dose dependent rect. 21 8
931 23.90 wind 7 4320 > th dose dependent rect. 22 11
956 23.91 wind 1 4320 < th dose dependent rect. 15 1
961 23.91 wind 9 4320 > th dose dependent rect. 23 6