Os02g0251200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0251200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.91 | 0.47 | 6.41 | 2.97 | 0.482 | -0.901 | 0.745 | 5 | 0.748 | 14.9 | 24.1 | 1200 | -- | -- |
| 108.1 | 0.484 | 6.52 | 2.06 | 0.545 | -0.705 | 0.104 | -- | 0.645 | 14.2 | 15 | 17097 | -- | -- |
| 101.67 | 0.47 | 6.41 | 2.95 | 0.488 | -0.911 | -- | 4.8 | 0.74 | 14.9 | 24.36 | 1229 | -- | -- |
| 107.7 | 0.483 | 6.51 | 2.15 | 0.553 | -0.78 | -- | -- | 0.662 | 14.6 | 9.908 | 17044 | -- | -- |
| 114.25 | 0.498 | 6.41 | 2.91 | -- | -1.06 | -- | 4.81 | 0.736 | -- | 24.4 | 1171 | -- | -- |
| 116.11 | 0.505 | 6.58 | 1.54 | 0.577 | -- | 0.442 | -- | 0.335 | 14.6 | -- | -- | -- | -- |
| 116.8 | 0.506 | 6.58 | 1.55 | 0.577 | -- | -- | -- | 0.337 | 14.5 | -- | -- | -- | -- |
| 125.53 | 0.522 | 6.5 | 2.17 | -- | -0.845 | -- | -- | 0.67 | -- | 8.255 | 16962 | -- | -- |
| 145.42 | 0.562 | 6.68 | -- | 0.587 | 0.952 | -- | -- | -0.12 | 14.4 | -23.4 | 47520 | -- | -- |
| 136.4 | 0.546 | 6.58 | 1.53 | -- | -- | -- | -- | 0.323 | -- | -- | -- | -- | -- |
| 180.36 | 0.628 | 6.62 | -- | 0.547 | -- | -- | -- | 0.164 | 14.5 | -- | -- | -- | -- |
| 165.73 | 0.6 | 6.68 | -- | -- | 0.914 | -- | -- | -0.12 | -- | -17.59 | 47520 | -- | -- |
| 198.03 | 0.657 | 6.62 | -- | -- | -- | -- | -- | 0.153 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.67 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 16 |
| 2 | 96.75 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 9 |
| 3 | 96.78 | temperature | 25.0 | 720 | > th | dose independent | sin | 12 | NA |
| 7 | 97.00 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 15 | 14 |
| 10 | 97.05 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 15 | 97.16 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 19 | 97.19 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 11 |
| 22 | 97.26 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 25 | 97.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 42 | 97.45 | temperature | 25.0 | 720 | < th | dose independent | rect. | 19 | 4 |
| 43 | 97.46 | temperature | 20.0 | 720 | > th | dose dependent | sin | 14 | NA |
| 61 | 97.66 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 2 |
| 64 | 97.70 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 68 | 97.74 | temperature | 25.0 | 720 | < th | dose independent | sin | 14 | NA |
| 115 | 98.12 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 126 | 98.16 | humidity | 90.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 138 | 98.23 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 142 | 98.24 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 169 | 98.38 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 14 |
| 223 | 98.56 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 244 | 98.64 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 12 | NA |
| 247 | 98.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 301 | 98.82 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 320 | 98.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 6 |
| 365 | 99.05 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 411 | 99.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 7 |
| 430 | 99.17 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 440 | 99.19 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 1 | 9 |
| 441 | 99.20 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 451 | 99.22 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 466 | 99.24 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 19 | 8 |
| 495 | 99.30 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 500 | 99.31 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 544 | 99.42 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 574 | 99.48 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 635 | 99.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 23 |
| 654 | 99.63 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 22 |
| 680 | 99.68 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 698 | 99.72 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 748 | 99.81 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 752 | 99.83 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 760 | 99.84 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 762 | 99.85 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 765 | 99.85 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 776 | 99.88 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 780 | 99.89 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 830 | 99.97 | humidity | 90.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 845 | 99.99 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 850 | 100.00 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 21 |
| 859 | 100.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 860 | 100.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 5 |
| 866 | 100.04 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 878 | 100.06 | humidity | 90.0 | 14400 | > th | dose independent | no | NA | NA |
| 885 | 100.06 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 911 | 100.11 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 916 | 100.12 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 943 | 100.16 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 2 |
| 945 | 100.16 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 952 | 100.18 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 959 | 100.19 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 985 | 100.23 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 989 | 100.23 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 17 | 20 |