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Os02g0250700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10 (0.0162) R2 : 0.291
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.466 (0.0341) R2dN8 : 0.376 R2N8 : 0.291
σ : 0.305
deviance : 42.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.8 0.277 10 -0.349 0.179 -0.373 0.0849 -0.873 0.45 0.947 68.01 6129 -- --
35.83 0.279 10 -0.326 0.175 -0.418 0.114 -- 0.458 0.731 68 6177 -- --
34.8 0.275 10 -0.344 0.181 -0.35 -- -0.942 0.437 1.11 68 6119 -- --
35.88 0.279 10 -0.326 0.176 -0.41 -- -- 0.455 0.795 68 6191 -- --
36.81 0.283 10 -0.345 -- -0.395 -- -0.804 0.455 -- 68.35 6125 -- --
38.23 0.29 10 -0.299 0.184 -- 0.0524 -- 0.43 1.36 -- -- -- --
38.24 0.29 10 -0.301 0.184 -- -- -- 0.429 1.42 -- -- -- --
37.5 0.285 10 -0.318 -- -0.444 -- -- 0.484 -- 69.71 6121 -- --
38.33 0.288 9.99 -- 0.166 -0.399 -- -- 0.528 0.524 70 6144 -- --
40.33 0.297 10 -0.294 -- -- -- -- 0.433 -- -- -- -- --
40.63 0.298 10 -- 0.179 -- -- -- 0.463 1.36 -- -- -- --
39.8 0.294 9.99 -- -- -0.423 -- -- 0.522 -- 70.76 4670 -- --
42.61 0.305 10 -- -- -- -- -- 0.466 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.91 humidity 80.0 1440 < th dose independent rect. 11 1
2 33.02 humidity 80.0 1440 > th dose independent rect. 11 1
4 33.34 humidity 70.0 1440 > th dose dependent rect. 11 1
7 33.59 precipitation 0.1 4320 > th dose dependent rect. 16 1
8 33.63 precipitation 0.1 4320 < th dose independent rect. 16 1
9 33.63 precipitation 0.1 4320 < th dose dependent rect. 16 1
10 33.68 precipitation 0.1 4320 > th dose dependent rect. 14 3
11 33.69 wind 1.0 4320 > th dose independent rect. 17 2
12 33.71 precipitation 0.1 4320 > th dose independent rect. 16 1
14 33.81 precipitation 0.1 4320 < th dose independent rect. 14 3
15 33.81 precipitation 0.1 4320 < th dose dependent rect. 14 3
18 33.93 precipitation 0.1 4320 > th dose independent rect. 14 3
25 34.05 precipitation 0.1 4320 < th dose independent rect. 4 13
26 34.05 precipitation 0.1 4320 < th dose dependent rect. 4 13
27 34.06 humidity 80.0 1440 > th dose dependent rect. 9 5
28 34.06 precipitation 0.1 4320 > th dose dependent rect. 4 13
34 34.09 precipitation 0.1 4320 > th dose independent rect. 4 13
42 34.11 humidity 60.0 270 > th dose dependent rect. 6 21
43 34.12 wind 1.0 4320 < th dose independent rect. 17 2
44 34.12 precipitation 0.1 1440 < th dose independent rect. 5 3
45 34.12 precipitation 0.1 1440 < th dose dependent rect. 5 3
46 34.12 precipitation 0.1 4320 > th dose dependent rect. 7 10
50 34.13 precipitation 0.1 4320 < th dose independent rect. 7 10
52 34.13 precipitation 0.1 4320 < th dose dependent rect. 7 10
55 34.15 precipitation 0.1 4320 > th dose independent rect. 7 10
58 34.16 precipitation 0.1 4320 > th dose dependent rect. 11 6
86 34.24 humidity 90.0 1440 > th dose dependent rect. 7 8
99 34.29 humidity 90.0 1440 > th dose dependent rect. 7 2
101 34.30 humidity 80.0 30 > th dose independent rect. 8 12
103 34.30 humidity 70.0 90 > th dose dependent rect. 8 19
112 34.33 humidity 70.0 30 > th dose dependent rect. 9 11
134 34.39 humidity 80.0 270 < th dose dependent rect. 11 5
136 34.40 humidity 90.0 720 < th dose dependent rect. 11 3
138 34.40 humidity 60.0 270 > th dose dependent rect. 7 12
149 34.43 precipitation 0.1 1440 > th dose dependent rect. 5 3
151 34.43 precipitation 0.1 1440 > th dose dependent rect. 5 8
162 34.45 humidity 60.0 720 > th dose dependent rect. 7 10
164 34.46 precipitation 0.1 1440 > th dose independent rect. 5 3
181 34.49 precipitation 0.1 1440 > th dose dependent rect. 5 6
187 34.50 precipitation 0.1 1440 > th dose independent rect. 5 8
188 34.50 precipitation 0.1 4320 > th dose dependent rect. 5 1
197 34.51 precipitation 0.1 4320 > th dose dependent rect. 1 16
226 34.54 precipitation 0.1 4320 > th dose independent rect. 5 1
247 34.57 precipitation 0.1 1440 > th dose independent rect. 5 6
261 34.58 wind 3.0 14400 < th dose dependent rect. 2 4
269 34.59 humidity 80.0 30 < th dose independent rect. 13 5
283 34.61 humidity 60.0 14400 > th dose independent rect. 15 1
284 34.61 wind 3.0 14400 < th dose dependent rect. 4 2
285 34.61 radiation 1.0 1440 < th dose dependent rect. 7 6
317 34.64 precipitation 0.1 4320 < th dose independent rect. 3 17
325 34.64 precipitation 0.1 4320 < th dose dependent rect. 3 17
334 34.65 radiation 1.0 1440 < th dose independent rect. 7 7
337 34.65 precipitation 0.1 4320 > th dose independent rect. 3 17
350 34.66 precipitation 0.1 4320 > th dose independent rect. 1 16
352 34.66 precipitation 0.1 4320 > th dose dependent rect. 19 1
354 34.66 wind 3.0 14400 < th dose dependent rect. 24 6
356 34.66 humidity 70.0 1440 > th dose dependent rect. 5 9
364 34.67 humidity 80.0 270 < th dose dependent rect. 13 1
374 34.67 humidity 90.0 10 < th dose dependent rect. 13 20
376 34.68 precipitation 0.1 4320 < th dose independent sin 2 NA
382 34.68 precipitation 0.1 4320 < th dose dependent sin 2 NA
383 34.68 wind 1.0 4320 < th dose dependent rect. 17 2
388 34.68 humidity 90.0 270 < th dose dependent rect. 11 9
394 34.69 precipitation 0.1 4320 > th dose independent sin 2 NA
417 34.70 humidity 80.0 14400 > th dose independent rect. 10 1
422 34.70 humidity 70.0 90 > th dose dependent sin 19 NA
452 34.72 radiation 1.0 1440 > th dose independent rect. 7 7
455 34.72 humidity 50.0 30 > th dose dependent sin 18 NA
474 34.72 humidity 90.0 30 < th dose dependent rect. 19 23
480 34.73 humidity 70.0 720 > th dose independent rect. 7 10
481 34.73 precipitation 0.1 4320 < th dose independent rect. 1 19
494 34.73 precipitation 0.1 4320 < th dose dependent rect. 1 19
503 34.74 precipitation 0.1 4320 > th dose independent rect. 1 19
514 34.75 humidity 60.0 14400 < th dose dependent sin 14 NA
515 34.75 humidity 70.0 14400 < th dose dependent rect. 12 1
525 34.75 humidity 90.0 270 < th dose dependent rect. 11 20
549 34.76 humidity 60.0 14400 < th dose dependent rect. 14 19
553 34.77 humidity 70.0 90 > th dose independent rect. 9 19
557 34.77 humidity 60.0 14400 < th dose dependent rect. 14 6
580 34.78 wind 1.0 1440 > th dose independent rect. 12 7
592 34.79 wind 1.0 14400 > th dose independent rect. 1 2
605 34.79 wind 3.0 14400 < th dose dependent rect. 21 9
615 34.80 humidity 60.0 14400 < th dose independent rect. 15 1
621 34.80 humidity 60.0 14400 > th dose independent rect. 15 18
658 34.82 humidity 60.0 14400 < th dose independent rect. 11 23
685 34.83 wind 1.0 1440 < th dose independent rect. 12 7
688 34.83 humidity 60.0 14400 < th dose independent rect. 15 22
690 34.83 humidity 80.0 30 < th dose independent rect. 19 23
725 34.84 humidity 60.0 14400 > th dose independent rect. 15 22
728 34.84 humidity 60.0 14400 < th dose independent rect. 18 23
732 34.84 humidity 90.0 30 < th dose dependent rect. 13 5
744 34.85 humidity 60.0 14400 < th dose independent rect. 11 6
752 34.85 humidity 90.0 30 < th dose dependent rect. 13 8
768 34.86 humidity 60.0 14400 < th dose independent sin 19 NA
772 34.86 humidity 60.0 14400 < th dose independent no NA NA
773 34.86 wind 1.0 14400 < th dose independent rect. 1 2
777 34.86 humidity 60.0 14400 < th dose independent rect. 8 12
876 34.87 humidity 60.0 14400 > th dose independent rect. 15 5
886 34.87 humidity 60.0 14400 < th dose independent rect. 8 9
887 34.87 humidity 60.0 14400 < th dose independent rect. 11 9
956 34.87 wind 1.0 1440 < th dose dependent rect. 12 7
968 34.88 precipitation 0.1 4320 < th dose independent rect. 7 1
971 34.88 humidity 80.0 30 < th dose independent rect. 15 3